Mercurial > repos > iuc > package_gfserver_35x1

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 15099b938e3ef54150ebf6b67969c27928c763c0
author iuc
date Mon, 18 Jul 2016 14:19:02 -0400
parents 10c4d2d3d1bd
children
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<?xml version="1.0"?>
<tool_dependency>
    <package name="gfServer" version="35x1">
        <install version="1.0">
            <actions>
                <action type="download_binary">
                    <url_template os="linux" architecture="x86_64" sha256sum="d25c348b108a5aff43f4bebd58c20fd222e79138437ce1279afa38665593f9d9">
                        https://github.com/bgruening/download_store/raw/945120ef142d850a16c89fb744f4bbbd0639bf34/ucsc/linux/x86_64/gfServer_35x1
                    </url_template>
                    <url_template os="darwin" architecture="i686" sha256sum="8593de3ee29e4c5bcf6061aee9a981eeaf9b09c59d1fc70b83032e4b8f4c1630">
                        https://github.com/bgruening/download_store/raw/945120ef142d850a16c89fb744f4bbbd0639bf34/ucsc/darwin/i386/gfServer_35x1
                    </url_template>
                    <url_template os="darwin" architecture="i386" sha256sum="8593de3ee29e4c5bcf6061aee9a981eeaf9b09c59d1fc70b83032e4b8f4c1630">
                        https://github.com/bgruening/download_store/raw/945120ef142d850a16c89fb744f4bbbd0639bf34/ucsc/darwin/i386/gfServer_35x1
                    </url_template>
                    <url_template os="darwin" architecture="x86_64" sha256sum="8a1e133e40f846139b9b9e525b99fc6626ff9ddc9c6efae9d477c16affe43862">
                        https://github.com/bgruening/download_store/raw/945120ef142d850a16c89fb744f4bbbd0639bf34/ucsc/darwin/x86_64/gfServer_35x1
                    </url_template>
                </action>

                <action type="move_file">
                    <source>gfServer_35x1</source>
                    <destination>$INSTALL_DIR/bin/gfServer</destination>
                </action>
                <action type="chmod">
                    <file mode="755">$INSTALL_DIR/bin/gfServer</file>
                </action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="append_to">$INSTALL_DIR/bin</environment_variable>
                    <environment_variable name="GFSERVER_ROOT_PATH" action="append_to">$INSTALL_DIR</environment_variable>
                </action>

            </actions>
        </install>
        <readme>
gfServer: a server that maintains an index of the genome in memory and uses the index to quickly find regions with high levels of sequence similarity to a query sequence.
https://genome.ucsc.edu/goldenPath/help/blatSpec.html
        </readme>
    </package>
</tool_dependency>