Mercurial > repos > iuc > package_gfserver_35x1

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 15099b938e3ef54150ebf6b67969c27928c763c0
author iuc
date Mon, 18 Jul 2016 14:19:02 -0400
parents 10c4d2d3d1bd
children
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98eff4a5927e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 15099b938e3ef54150ebf6b67969c27928c763c0
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1 <?xml version="1.0"?>
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10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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2 <tool_dependency>
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3 <package name="gfServer" version="35x1">
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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4 <install version="1.0">
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5 <actions>
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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6 <action type="download_binary">
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98eff4a5927e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 15099b938e3ef54150ebf6b67969c27928c763c0
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7 <url_template os="linux" architecture="x86_64" sha256sum="d25c348b108a5aff43f4bebd58c20fd222e79138437ce1279afa38665593f9d9">
98eff4a5927e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 15099b938e3ef54150ebf6b67969c27928c763c0
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8 https://github.com/bgruening/download_store/raw/945120ef142d850a16c89fb744f4bbbd0639bf34/ucsc/linux/x86_64/gfServer_35x1
98eff4a5927e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 15099b938e3ef54150ebf6b67969c27928c763c0
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9 </url_template>
98eff4a5927e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 15099b938e3ef54150ebf6b67969c27928c763c0
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10 <url_template os="darwin" architecture="i686" sha256sum="8593de3ee29e4c5bcf6061aee9a981eeaf9b09c59d1fc70b83032e4b8f4c1630">
98eff4a5927e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 15099b938e3ef54150ebf6b67969c27928c763c0
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11 https://github.com/bgruening/download_store/raw/945120ef142d850a16c89fb744f4bbbd0639bf34/ucsc/darwin/i386/gfServer_35x1
98eff4a5927e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 15099b938e3ef54150ebf6b67969c27928c763c0
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12 </url_template>
98eff4a5927e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 15099b938e3ef54150ebf6b67969c27928c763c0
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13 <url_template os="darwin" architecture="i386" sha256sum="8593de3ee29e4c5bcf6061aee9a981eeaf9b09c59d1fc70b83032e4b8f4c1630">
98eff4a5927e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 15099b938e3ef54150ebf6b67969c27928c763c0
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14 https://github.com/bgruening/download_store/raw/945120ef142d850a16c89fb744f4bbbd0639bf34/ucsc/darwin/i386/gfServer_35x1
98eff4a5927e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 15099b938e3ef54150ebf6b67969c27928c763c0
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15 </url_template>
98eff4a5927e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 15099b938e3ef54150ebf6b67969c27928c763c0
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16 <url_template os="darwin" architecture="x86_64" sha256sum="8a1e133e40f846139b9b9e525b99fc6626ff9ddc9c6efae9d477c16affe43862">
98eff4a5927e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 15099b938e3ef54150ebf6b67969c27928c763c0
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17 https://github.com/bgruening/download_store/raw/945120ef142d850a16c89fb744f4bbbd0639bf34/ucsc/darwin/x86_64/gfServer_35x1
98eff4a5927e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 15099b938e3ef54150ebf6b67969c27928c763c0
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18 </url_template>
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10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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19 </action>
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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20
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21 <action type="move_file">
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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22 <source>gfServer_35x1</source>
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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23 <destination>$INSTALL_DIR/bin/gfServer</destination>
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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24 </action>
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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25 <action type="chmod">
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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26 <file mode="755">$INSTALL_DIR/bin/gfServer</file>
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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27 </action>
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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28 <action type="set_environment">
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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29 <environment_variable name="PATH" action="append_to">$INSTALL_DIR/bin</environment_variable>
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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30 <environment_variable name="GFSERVER_ROOT_PATH" action="append_to">$INSTALL_DIR</environment_variable>
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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31 </action>
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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32
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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33 </actions>
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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34 </install>
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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35 <readme>
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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36 gfServer: a server that maintains an index of the genome in memory and uses the index to quickly find regions with high levels of sequence similarity to a query sequence.
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37 https://genome.ucsc.edu/goldenPath/help/blatSpec.html
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38 </readme>
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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39 </package>
10c4d2d3d1bd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gfserver_35x1 commit 0c094c3df9574cb057ccb65878f98f300d5b0a09
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40 </tool_dependency>