Mercurial > repos > iuc > package_gemini_0_9_1

changeset 1:e516984ed2c5 draft

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Uploaded
author iuc
date Thu, 07 Aug 2014 11:04:33 -0400
parents 18f4b4fe455c
children 8000d616c600
files tool_dependencies.xml
diffstat 1 files changed, 29 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Wed Aug 06 17:57:42 2014 -0400
+++ b/tool_dependencies.xml	Thu Aug 07 11:04:33 2014 -0400
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="grabix" version="0.1.3">
-        <repository changeset_revision="ea8dd47bccea" name="package_grabix_0_1_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="8a1184d30e64" name="package_grabix_0_1_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="tabix" version="0.2.6">
         <repository changeset_revision="c1743e071a28" name="package_tabix_0_2_6" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
@@ -15,6 +15,18 @@
     <package name="pybedtools" version="0.6.6">
         <repository changeset_revision="cc2ed79fc537" name="package_pybedtools_0_6_6" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
+    <package name="bx-python" version="12-2013">
+        <repository changeset_revision="5457e32b427c" name="package_bx_python_12_2013" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="numpy" version="1.7.1">
+        <repository changeset_revision="84125ffacb90" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="scipy" version="0.12.0">
+        <repository changeset_revision="4b2ef8519550" name="package_scipy_0_12" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="pandas" version="0.14.1">
+        <repository changeset_revision="21afd61aae1e" name="package_pandas_0_14" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
     <package name="gemini" version="0.9.1">
         <install version="1.0">
             <actions>
@@ -23,15 +35,30 @@
 
                 <!-- populate the environment variables from the dependend repos -->
                 <action type="set_environment_for_install">
+                    <repository changeset_revision="84125ffacb90" name="package_numpy_1_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="numpy" version="1.7.1" />
+                    </repository>
+                    <repository changeset_revision="4b2ef8519550" name="package_scipy_0_12" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="scipy" version="0.12.0" />
+                    </repository>
+                    <repository changeset_revision="21afd61aae1e" name="package_pandas_0_14" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="pandas" version="0.14.1" />
+                    </repository>
                     <repository changeset_revision="c1743e071a28" name="package_tabix_0_2_6" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                         <package name="tabix" version="0.2.6" />
                     </repository>
-                    <repository changeset_revision="ea8dd47bccea" name="package_grabix_0_1_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                    <repository changeset_revision="8a1184d30e64" name="package_grabix_0_1_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                         <package name="grabix" version="0.1.3" />
                     </repository>
                     <repository changeset_revision="cc2ed79fc537" name="package_pybedtools_0_6_6" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                         <package name="pybedtools" version="0.6.6" />
                     </repository>
+                    <repository changeset_revision="5457e32b427c" name="package_bx_python_12_2013" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="bx-python" version="12-2013" />
+                    </repository>
+                    <repository changeset_revision="5457e32b427c" name="package_bx_python_12_2013" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="bx-python" version="12-2013" />
+                    </repository>
                 </action>
 
                 <action type="make_directory">$INSTALL_DIR/lib/python</action>