Mercurial > repos > iuc > package_gemini_0_10_0

changeset 2:a4eca4f434e6 draft

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Uploaded
author iuc
date Wed, 18 Feb 2015 11:33:52 -0500
parents 75ffd114bf5f
children 3f2fb13de201
files tool_dependencies.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Sun Aug 24 17:38:41 2014 -0400
+++ b/tool_dependencies.xml	Wed Feb 18 11:33:52 2015 -0500
@@ -10,7 +10,7 @@
         <repository changeset_revision="c1743e071a28" name="package_tabix_0_2_6" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="samtools" version="0.1.19">
-        <repository changeset_revision="632f1a03db92" name="package_samtools_0_1_19" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="786e3000ca58" name="package_samtools_0_1_19" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="bedtools" version="2.19.1">
         <repository changeset_revision="3ad963111153" name="package_bedtools_2_19" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
@@ -29,7 +29,7 @@
                 </action>
 
                 <action type="shell_command">
-                    python gemini_install.py $INSTALL_DIR $INSTALL_DIR --nosudo --nodata --notools --gemini-version 0.10.0
+                    export HOME=$INSTALL_DIR &amp;&amp; python gemini_install.py $INSTALL_DIR $INSTALL_DIR --nosudo --nodata --notools --gemini-version 0.10.0
                 </action>
 
                 <action type="set_environment">