Mercurial > repos > iuc > package_deseq2_1_6_1
changeset 0:2373c70fa097 draft
Uploaded
| author | iuc |
|---|---|
| date | Thu, 13 Nov 2014 12:40:51 -0500 |
| parents | |
| children | d26ff4913620 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 67 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Thu Nov 13 12:40:51 2014 -0500 @@ -0,0 +1,67 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="R" version="3.1.0"> + <repository changeset_revision="a6cc7706ea14" name="package_r_3_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="deseq2" version="1.6.1"> + <install version="1.0"> + <actions> + <action type="setup_r_environment"> + + <repository changeset_revision="a6cc7706ea14" name="package_r_3_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> + <package name="R" version="3.1.0" /> + </repository> + + <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/base64enc_0.1-2.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/colorspace_1.2-4.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/iterators_1.0.7.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/brew_1.0-6.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/checkmate_1.5.0.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/DBI_0.3.1.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/fail_1.2.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/RSQLite_1.0.0.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/sendmailR_1.2-1.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/stringr_0.6.2.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/XML_3.98-1.1.tar.gz</package> + 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<package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/Formula_1.1-2.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/latticeExtra_0.6-26.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/acepack_1.3-3.3.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/S4Vectors_0.4.0.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/IRanges_2.0.0.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/GenomicRanges_1.18.1.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/Rcpp_0.11.3.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/RcppArmadillo_0.4.500.0.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/BiocParallel_1.0.0.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/genefilter_1.48.1.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/locfit_1.5-9.1.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/geneplotter_1.44.0.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/ggplot2_1.0.0.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/Hmisc_3.14-5.tar.gz</package> + <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/DESeq2_1.6.1.tar.gz</package> + </action> + </actions> + </install> + <readme> + Differential gene expression analysis based on the negative binomial distribution. + http://www.bioconductor.org/packages/release/bioc/html/DESeq2.html + </readme> + </package> +</tool_dependency>