changeset 0:42cf9b16b7df draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue Mar 17 15:37:49 2015 -0400
@@ -0,0 +1,36 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="perl" version="5.18.1">
+        <repository changeset_revision="f6efd799dc70" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="circos" version="0.67.5">
+        <repository changeset_revision="2488e6ef69a8" name="package_circos_0_67_5" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="circostools" version="0.20">
+        <install version="1.0">
+            <actions>
+                <action type="setup_perl_environment">
+                    <repository changeset_revision="f6efd799dc70" name="package_perl_5_18" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="perl" version="5.18.1" />
+                    </repository>
+                </action>
+                <action type="download_by_url">http://mkweb.bcgsc.ca/dev/circos/distribution/circos-tools-0.20.tgz</action>
+                <action type="move_directory_files">
+                    <source_directory>.</source_directory>
+                    <destination_directory>$INSTALL_DIR</destination_directory>
+                </action>
+                <action type="set_environment">
+                    <environment_variable action="set_to" name="CIRCOSTOOLS">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+Circos Tools
+============
+
+Several, utility add-on scripts are available, such as for bundling links.
+These are not necessary for Circos, but helpful in carrying out common data
+reduction and analysis tasks. Tools are described in the Tools Tutorial.
+</readme>
+    </package>
+</tool_dependency>