view tool_dependencies.xml @ 4:803954bd4ff7 draft default tip

planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/packages/package_blast_plus_2_2_31/ commit 3f6b5c953d522a724bbcd403bcb86f1e2757a556-dirty

<?xml version='1.0' encoding='utf-8'?>
<tool_dependency>
    <package name="blast+" version="2.2.31">
        <install version="1.0">
            <actions_group>
                <!-- Download the binaries for BLAST+ compatible with 64-bit OSX. -->
                <actions os="darwin" architecture="x86_64">
                    <!-- Original URL ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.31/ncbi-blast-2.2.31+-universal-macosx.tar.gz -->
                    <action type="download_by_url" sha256sum="b5106c70827af90a7117b4fafee114b964bddaceb941b8047dcbaf0d613619d6" target_filename="ncbi-blast-2.2.31+-universal-macosx.tar.gz">https://depot.galaxyproject.org/software/blast_plus/blast_plus_2.2.31_darwin_all.tar.gz</action>
                    <action type="move_directory_files">
                         <source_directory>bin</source_directory>
                         <destination_directory>$INSTALL_DIR</destination_directory>
                     </action>
                </actions>
                <!-- Download the binaries for BLAST+ compatible with 32-bit OSX. -->
                <actions os="darwin" architecture="i386">
                    <!-- Original URL ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.31/ncbi-blast-2.2.31+-universal-macosx.tar.gz -->
                    <action type="download_by_url" sha256sum="b5106c70827af90a7117b4fafee114b964bddaceb941b8047dcbaf0d613619d6" target_filename="ncbi-blast-2.2.31+-universal-macosx.tar.gz">https://depot.galaxyproject.org/software/blast_plus/blast_plus_2.2.31_darwin_all.tar.gz</action>
                    <action type="move_directory_files">
                        <source_directory>bin</source_directory>
                        <destination_directory>$INSTALL_DIR</destination_directory>
                    </action>
                </actions>
                <!-- Download the binaries for BLAST+ compatible with 64-bit Linux. -->
                <actions os="linux" architecture="x86_64">
                    <!-- Original URL ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.31/ncbi-blast-2.2.31+-x64-linux.tar.gz -->
                    <action type="download_by_url" sha256sum="322b951e1bca2e8ef16c76a64d78987443dc13fbbbb7a40f1683a97d98e4f408" target_filename="ncbi-blast-2.2.31+-x64-linux.tar.gz">https://depot.galaxyproject.org/software/blast_plus/blast_plus_2.2.31_linux_x64.tar.gz</action>
                    <action type="move_directory_files">
                        <source_directory>bin</source_directory>
                        <destination_directory>$INSTALL_DIR</destination_directory>
                    </action>
                </actions>
                <actions>
                    <action type="shell_command">echo "ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported."</action>
                    <action type="shell_command">echo "Your machine details (the output from 'uname' and 'arch'):"</action>
                    <action type="shell_command">uname</action>
                    <action type="shell_command">arch</action>
                    <action type="shell_command">echo "Please report this via https://github.com/peterjc/galaxy_blast/issues - thank you!"</action>
                    <action type="shell_command">false</action>
                    <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install -->
                </actions>
                <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. -->
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
                    <environment_variable name="BLAST_ROOT_DIR" action="set_to">$INSTALL_DIR</environment_variable>
                </action>
            </actions_group>
        </install>
        <readme>
Downloads the precompiled 64 bit Linux, or Mac OS X BLAST+ binaries from the NCBI,
which is faster than performing a local compilation, avoids any issues with build
dependencies, and is more reproducible between installations as there is no
variability from the compiler or library versions.

Note that as of BLAST+ 2.2.31 the NCBI do not provide 32 bit Linux binaries.

For more details, see:
http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&amp;PAGE_TYPE=BlastDocs&amp;DOC_TYPE=Download
        </readme>
    </package>
</tool_dependency>