Mercurial > repos > iuc > package_bedtools_2_17_0

changeset 0:5549e6124e48 draft

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Uploaded
author iuc
date Wed, 21 May 2014 23:17:53 -0400
parents
children 1607825427da
files tool_dependencies.xml
diffstat 1 files changed, 25 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed May 21 23:17:53 2014 -0400
@@ -0,0 +1,25 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="bedtools" version="2.17.0">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://bedtools.googlecode.com/files/BEDTools.v2.17.0.tar.gz</action>
+                <action type="shell_command">make</action>
+                <action type="move_directory_files">
+                    <source_directory>bin</source_directory>
+                    <destination_directory>$INSTALL_DIR/bin</destination_directory>
+                </action>                
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+
+Genuine IUC/Frobozz Magic co recipe to install Aaron Quinlan's Bed Tools code to accompany his Galaxy wrappers.
+ross lazarus May 2014
+                
+        </readme>
+    </package>
+
+</tool_dependency>