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annotate macros.xml @ 29:cbe067a674a9 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/minimap2 commit a02980a757cba9680a7863a3e67e9e10d77fc9f6
author iuc
date Thu, 23 Oct 2025 21:33:35 +0000
parents f774b65c34d0
children
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11ef1ee4282c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/minimap2 commit 3617059cec3cc200dc22450347c070c4207b8852"
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1 <macros>
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f774b65c34d0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/minimap2 commit 980f7472892817697208792e4443fa579625b696
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2 <token name="@TOOL_VERSION@">2.28</token>
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cbe067a674a9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/minimap2 commit a02980a757cba9680a7863a3e67e9e10d77fc9f6
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3 <token name="@VERSION_SUFFIX@">2</token>
cbe067a674a9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/minimap2 commit a02980a757cba9680a7863a3e67e9e10d77fc9f6
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4 <token name="@PROFILE@">24.0</token>
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5 <xml name="edam_ontology">
11ef1ee4282c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/minimap2 commit 3617059cec3cc200dc22450347c070c4207b8852"
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6 <edam_topics>
11ef1ee4282c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/minimap2 commit 3617059cec3cc200dc22450347c070c4207b8852"
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7 <edam_topic>topic_0102</edam_topic>
11ef1ee4282c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/minimap2 commit 3617059cec3cc200dc22450347c070c4207b8852"
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8 </edam_topics>
11ef1ee4282c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/minimap2 commit 3617059cec3cc200dc22450347c070c4207b8852"
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9 <edam_operations>
11ef1ee4282c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/minimap2 commit 3617059cec3cc200dc22450347c070c4207b8852"
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10 <edam_operation>operation_0292</edam_operation>
11ef1ee4282c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/minimap2 commit 3617059cec3cc200dc22450347c070c4207b8852"
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11 </edam_operations>
11ef1ee4282c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/minimap2 commit 3617059cec3cc200dc22450347c070c4207b8852"
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12 </xml>
11ef1ee4282c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/minimap2 commit 3617059cec3cc200dc22450347c070c4207b8852"
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13 <xml name="requirements">
11ef1ee4282c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/minimap2 commit 3617059cec3cc200dc22450347c070c4207b8852"
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14 <requirements>
11ef1ee4282c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/minimap2 commit 3617059cec3cc200dc22450347c070c4207b8852"
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15 <requirement type="package" version="@TOOL_VERSION@">minimap2</requirement>
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f774b65c34d0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/minimap2 commit 980f7472892817697208792e4443fa579625b696
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16 <requirement type="package" version="1.19.2">samtools</requirement>
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11ef1ee4282c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/minimap2 commit 3617059cec3cc200dc22450347c070c4207b8852"
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17 </requirements>
11ef1ee4282c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/minimap2 commit 3617059cec3cc200dc22450347c070c4207b8852"
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18 </xml>
11ef1ee4282c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/minimap2 commit 3617059cec3cc200dc22450347c070c4207b8852"
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19 <xml name="pe_anaylsis_fixed_selector">
11ef1ee4282c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/minimap2 commit 3617059cec3cc200dc22450347c070c4207b8852"
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20 <param name="analysis_type_selector" type="select"
11ef1ee4282c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/minimap2 commit 3617059cec3cc200dc22450347c070c4207b8852"
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21 label="Presets for PE reads alignment"
11ef1ee4282c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/minimap2 commit 3617059cec3cc200dc22450347c070c4207b8852"
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22 help="These are the minimap2 preset options for PE alignment of short reads. You can customize these and other settings in the indexing, mapping and alignment options sections below.">
11ef1ee4282c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/minimap2 commit 3617059cec3cc200dc22450347c070c4207b8852"
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23 <option value="sr">Short reads without splicing (-k21 -w11 --sr -F800 -A2 -B8 -O12,32 -E2,1 -r50 -p.5 -N20 -f1000,5000 -n2 -m20 -s40 -g200 -2K50m --heap-sort=yes --secondary=no) (sr)</option>
11ef1ee4282c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/minimap2 commit 3617059cec3cc200dc22450347c070c4207b8852"
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24 </param>
11ef1ee4282c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/minimap2 commit 3617059cec3cc200dc22450347c070c4207b8852"
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25 </xml>
11ef1ee4282c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/minimap2 commit 3617059cec3cc200dc22450347c070c4207b8852"
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26 <xml name="citations">
11ef1ee4282c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/minimap2 commit 3617059cec3cc200dc22450347c070c4207b8852"
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27 <citations>
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28 <citation type="doi">10.1093/bioinformatics/btp324</citation>
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29 <citation type="doi">10.1093/bioinformatics/btp698</citation>
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cbe067a674a9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/minimap2 commit a02980a757cba9680a7863a3e67e9e10d77fc9f6
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30 <citation type="doi">10.1093/bioinformatics/bty191</citation>
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11ef1ee4282c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/minimap2 commit 3617059cec3cc200dc22450347c070c4207b8852"
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31 </citations>
11ef1ee4282c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/minimap2 commit 3617059cec3cc200dc22450347c070c4207b8852"
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32 </xml>
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33 </macros>