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changeset 18:ab352bb83cb2 draft

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Uploaded
author iuc
date Sat, 15 Feb 2014 15:50:45 -0500
parents 35a80f8dda5c
children 05aca18fd8dc
files macs2_bdgbroadcall.xml macs2_bdgpeakcall.xml macs2_callpeak.xml macs2_macros.xml macs2_predictd.xml
diffstat 5 files changed, 5 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/macs2_bdgbroadcall.xml	Sat Feb 15 15:43:39 2014 -0500
+++ b/macs2_bdgbroadcall.xml	Sat Feb 15 15:50:45 2014 -0500
@@ -1,7 +1,7 @@
 <tool id="macs2_bdgbroadcall" name="MACS2 bdgbroadcall" version="2.0.10.0">
     <description>Call broad peaks from bedGraph output</description>
     <expand macro="requirements">
-        <requirement type="package" version="4.1.0">awk</requirement>
+        <requirement type="package" version="4.1.0">gnu_awk</requirement>
     </expand>
     <expand macro="version_command" />
     <macros>
--- a/macs2_bdgpeakcall.xml	Sat Feb 15 15:43:39 2014 -0500
+++ b/macs2_bdgpeakcall.xml	Sat Feb 15 15:50:45 2014 -0500
@@ -1,7 +1,7 @@
 <tool id="macs2_bdgpeakcall" name="MACS2 bdgpeakcall" version="2.0.10.0">
     <description>Call peaks from bedGraph output</description>
     <expand macro="requirements">
-        <requirement type="package" version="4.1.0">awk</requirement>
+        <requirement type="package" version="4.1.0">gnu_awk</requirement>
     </expand>
     <expand macro="version_command" />
     <macros>
--- a/macs2_callpeak.xml	Sat Feb 15 15:43:39 2014 -0500
+++ b/macs2_callpeak.xml	Sat Feb 15 15:50:45 2014 -0500
@@ -2,7 +2,7 @@
     <description>Call peaks from alignment results</description>
     <expand macro="requirements">
         <requirement type="package" version="3.0.1">R_3_0_1</requirement>
-        <requirement type="package" version="4.1.0">awk</requirement>
+        <requirement type="package" version="4.1.0">gnu_awk</requirement>
         <requirement type="set_environment">MACS2_SCRIPT_PATH</requirement>
     </expand>
     <expand macro="version_command" />
--- a/macs2_macros.xml	Sat Feb 15 15:43:39 2014 -0500
+++ b/macs2_macros.xml	Sat Feb 15 15:50:45 2014 -0500
@@ -3,6 +3,7 @@
         <requirements>
             <requirement type="package" version="2.0.10.3">macs2</requirement>
             <requirement type="package" version="1.7.1">numpy</requirement>
+            <requirement type="package" version="0.12.0">scipy</requirement>
             <yield />
         </requirements>
     </xml>
--- a/macs2_predictd.xml	Sat Feb 15 15:43:39 2014 -0500
+++ b/macs2_predictd.xml	Sat Feb 15 15:50:45 2014 -0500
@@ -2,7 +2,7 @@
     <description>Predict 'd' or fragment size from alignment results</description>
     <expand macro="requirements">
         <requirement type="package" version="3.0.1">R_3_0_1</requirement>
-        <requirement type="package" version="4.1.0">awk</requirement>
+        <requirement type="package" version="4.1.0">gnu_awk</requirement>
     </expand>
     <expand macro="version_command" />
     <macros>