Mercurial > repos > iuc > macs2

diff macs2_filterdup.xml @ 27:16545befe8b5 draft

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author iuc
date Thu, 08 Jan 2015 13:39:36 -0500
parents 59845dc3331f
children
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--- a/macs2_filterdup.xml	Fri Sep 19 13:43:11 2014 -0400
+++ b/macs2_filterdup.xml	Thu Jan 08 13:39:36 2015 -0500
@@ -1,4 +1,4 @@
-<tool id="macs2_filterdup" name="MACS2 filterdup" version="2.0.10.0">
+<tool id="macs2_filterdup" name="MACS2 filterdup" version="@VERSION_STRING@.0">
     <description>Remove duplicate reads at the same position</description>
     <expand macro="requirements" />
     <expand macro="version_command" />
@@ -40,7 +40,8 @@
             <param name="infile" value="ChIP_200K_w_dups.bed" ftype="bed"/>
             <param name="pvalue" value="1e-5"/>
             <param name="keep_dup_options_selector" value="auto"/>
-            <param name="effective_genome_size_options_selector" value="3300000000"/>
+            <param name="effective_genome_size_options_selector" value="user_defined" />
+            <param name="gsize" value="3300000000" />
             <output name="outfile" file="filterdup_on_ChIP_200K_w_dups.bed"/>
         </test>
     </tests>