comparison macs2_filterdup.xml @ 27:16545befe8b5 draft

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26:59845dc3331f

<tool id="macs2_filterdup" name="MACS2 filterdup" version="2.0.10.0">
    <description>Remove duplicate reads at the same position</description>
    <expand macro="requirements" />
    <expand macro="version_command" />
    <macros>
        <import>macs2_macros.xml</import>

    <tests>
        <test>
            <param name="infile" value="ChIP_200K_w_dups.bed" ftype="bed"/>
            <param name="pvalue" value="1e-5"/>
            <param name="keep_dup_options_selector" value="auto"/>
            <param name="effective_genome_size_options_selector" value="3300000000"/>
            <output name="outfile" file="filterdup_on_ChIP_200K_w_dups.bed"/>
        </test>
    </tests>
    <help>
**What it does**

27:16545befe8b5

<tool id="macs2_filterdup" name="MACS2 filterdup" version="@VERSION_STRING@.0">
    <description>Remove duplicate reads at the same position</description>
    <expand macro="requirements" />
    <expand macro="version_command" />
    <macros>
        <import>macs2_macros.xml</import>

    <tests>
        <test>
            <param name="infile" value="ChIP_200K_w_dups.bed" ftype="bed"/>
            <param name="pvalue" value="1e-5"/>
            <param name="keep_dup_options_selector" value="auto"/>
            <param name="effective_genome_size_options_selector" value="user_defined" />
            <param name="gsize" value="3300000000" />
            <output name="outfile" file="filterdup_on_ChIP_200K_w_dups.bed"/>
        </test>
    </tests>
    <help>
**What it does**