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annotate tool_dependencies.xml @ 11:ac24388a0fda draft

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author iuc
date Thu, 23 Jan 2014 11:31:32 -0500
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="numpy" version="1.7.1">
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4 <repository changeset_revision="84125ffacb90" name="package_numpy_1_7" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="scipy" version="0.12.0">
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7 <repository changeset_revision="4b2ef8519550" name="package_scipy_0_12" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" />
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8 </package>
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9 <package name="R_3_0_1" version="3.0.1">
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10 <repository changeset_revision="1d5b86c2e93d" name="package_r_3_0_1" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" />
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11 </package>
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12 <set_environment version="1.0">
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13 <environment_variable action="set_to" name="MACS2_SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable>
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14 </set_environment>
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15 <package name="macs2" version="2.0.10.2">
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16 <install version="1.0">
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17 <actions>
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18 <action type="download_by_url">https://pypi.python.org/packages/source/M/MACS2/MACS2-2.0.10.07132012.tar.gz</action>
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19 <action type="set_environment_for_install">
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20 <repository changeset_revision="84125ffacb90" name="package_numpy_1_7" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
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21 <package name="numpy" version="1.7.1" />
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22 </repository>
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23 <repository changeset_revision="4b2ef8519550" name="package_scipy_0_12" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
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24 <package name="scipy" version="0.12.0" />
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25 </repository>
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26 </action>
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27 <action type="make_directory">$INSTALL_DIR/lib/python</action>
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28 <action type="shell_command">
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29 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
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30 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
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31 </action>
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32 <action type="set_environment">
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33 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
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34 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
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35 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable>
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36 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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37 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_SCIPY]</environment_variable>
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38 <environment_variable action="set_to" name="PYTHONPATH_MACS2">$INSTALL_DIR/lib/python</environment_variable>
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39 </action>
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40 </actions>
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41 </install>
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42 <readme>Macs2 installation instructions. MACS2 can be found at https://github.com/taoliu/MACS</readme>
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43 </package>
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44 </tool_dependency>