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changeset 15:9876fc2456ac draft

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Uploaded
author iuc
date Wed, 08 Apr 2015 22:46:08 -0400
parents 4289073a653e
children ae03de7a9fee
files gemini_load.xml
diffstat 1 files changed, 3 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/gemini_load.xml	Thu Mar 19 22:41:28 2015 -0400
+++ b/gemini_load.xml	Wed Apr 08 22:46:08 2015 -0400
@@ -8,10 +8,12 @@
     </macros>
     <command>
 <![CDATA[
+        ln -s "${ infile }" input.vcf &&
+
         gemini 
             --annotation-dir ${annotation_databases.fields.path}
             @BINARY@
-            -v "${ infile }"
+            -v input.vcf
             #if str( $annotation_type ) != "None":
                 -t $annotation_type
             #end if