view gemini_db_info.xml @ 19:27ce3de83007 draft

Deleted selected files

<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0">
    <description>List the gemini database tables and columns</description>
    <macros>
        <import>gemini_macros.xml</import>
        <token name="@BINARY@">db_info</token>
    </macros>
    <expand macro="requirements" />
    <expand macro="stdio" />
    <expand macro="version_command" />
    <command>
<![CDATA[
        gemini @BINARY@
            "${ infile }" | tr -s ' ' '\t'
            > "${ outfile }"
]]>
    </command>
    <inputs>
        <expand macro="infile" />
    </inputs>
    <outputs>
        <data name="outfile" format="tabular" />
    </outputs>
    <tests>
        <test>
        </test>
    </tests>
    <help>
**What it does**

Because of the sheer number of annotations that are stored in gemini, there are admittedly too many columns to remember by rote.
If you can’t recall the name of particular column, just use the db_info tool. It will report all of the tables and all of the columns / types in each table.

@CITATION@
    </help>
    <expand macro="citations"/>
</tool>