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annotate gemini_db_info.xml @ 19:27ce3de83007 draft

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author iuc
date Fri, 16 Oct 2015 13:55:09 -0400
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1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0">
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2 <description>List the gemini database tables and columns</description>
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3 <macros>
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4 <import>gemini_macros.xml</import>
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5 <token name="@BINARY@">db_info</token>
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6 </macros>
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7 <expand macro="requirements" />
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8 <expand macro="stdio" />
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9 <expand macro="version_command" />
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10 <command>
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11 <![CDATA[
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12 gemini @BINARY@
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13 "${ infile }" | tr -s ' ' '\t'
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14 > "${ outfile }"
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15 ]]>
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16 </command>
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17 <inputs>
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18 <expand macro="infile" />
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19 </inputs>
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20 <outputs>
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21 <data name="outfile" format="tabular" />
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22 </outputs>
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23 <tests>
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24 <test>
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25 </test>
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26 </tests>
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27 <help>
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28 **What it does**
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29
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30 Because of the sheer number of annotations that are stored in gemini, there are admittedly too many columns to remember by rote.
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31 If you can’t recall the name of particular column, just use the db_info tool. It will report all of the tables and all of the columns / types in each table.
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32
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33 @CITATION@
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34 </help>
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35 <expand macro="citations"/>
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36 </tool>