Mercurial > repos > iuc > deseq2

diff deseq2.xml @ 7:681fd2c5f47a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 470804fe1d65ce5bf49804c7f249c51f6a567f9f-dirty
author iuc
date Sat, 05 Sep 2015 04:58:32 -0400
parents 982bd8bfa44c
children 6a8678140dd9
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--- a/deseq2.xml	Sat Sep 05 04:37:45 2015 -0400
+++ b/deseq2.xml	Sat Sep 05 04:58:32 2015 -0400
@@ -25,10 +25,10 @@
         echo $(R --version | grep version | grep -v GNU)", DESeq2 version" $(R --vanilla --slave -e "library(DESeq2); cat(sessionInfo()\$otherPkgs\$DESeq2\$Version)" 2> /dev/null | grep -v -i "WARNING: ")
     ]]>
     </version_command>
-    <command interpreter="Rscript">
+    <command>
     <![CDATA[
         #import json
-        \$DESEQ2_ROOT_PATH/script/deseq2.R
+        Rscript \$DESEQ2_ROOT_PATH/script/deseq2.R
             -o "$deseq_out"
             #if $pdf:
                 -p "$plots"