Mercurial > repos > iuc > datatyp_ipynb
changeset 3:d25397969a4c draft default tip
Uploaded
| author | iuc |
|---|---|
| date | Mon, 28 Jul 2014 04:42:50 -0400 |
| parents | ed64ded866dd |
| children | |
| files | ipynb.py |
| diffstat | 1 files changed, 11 insertions(+), 11 deletions(-) [+] |
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--- a/ipynb.py Mon Jul 28 03:47:05 2014 -0400 +++ b/ipynb.py Mon Jul 28 04:42:50 2014 -0400 @@ -1,13 +1,19 @@ # -*- coding: utf-8 -*- -from galaxy.datatypes.json_datatyp import Json as JsonClass +#from galaxy.datatypes.json_datatyp import Json as JsonClass +from galaxy.datatypes.data import Text from galaxy.datatypes.data import get_file_peek +from galaxy import util import subprocess import tempfile +import logging import json import os -class Ipynb( JsonClass ): +log = logging.getLogger(__name__) + +#class Ipynb( JsonClass ): +class Ipynb( Text ): file_ext = "ipynb" def set_peek( self, dataset, is_multi_byte=False ): @@ -39,22 +45,16 @@ return self._serve_raw(trans, dataset, to_ext) else: ofile_handle = tempfile.NamedTemporaryFile(delete=False) - ofilename = file_handle.name + ofilename = ofile_handle.name ofile_handle.close() try: - cmd = 'ipython nbconvert --to html --template basic %s %s' % (dataset.file_name, ofilename) - subprocess.call(cmd) + cmd = 'ipython nbconvert --to html --template basic %s --output %s' % (dataset.file_name, ofilename) + subprocess.call(cmd, shell=True) ofilename = '%s.html' % ofilename except: ofilename = dataset.file_name log.exception( 'Command "%s" failed. Could not convert the IPython Notebook to HTML, defaulting to plain text.' % cmd ) return open( ofilename ) - """return trans.fill_template( "/dataset/tabular_chunked.mako", - dataset = dataset, - chunk = self.get_chunk(trans, dataset, 0), - column_number = column_number, - column_names = column_names, - column_types = column_types )""" def set_meta( self, dataset, **kwd ): """