Mercurial > repos > iuc > data_manager_mash_sketch_builder
changeset 2:1611f2a6f221 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mash_sketch_builder/ commit 096286097ed5cdf189a1b68c3fc34d10f4142e54
| author | iuc |
|---|---|
| date | Sun, 16 Apr 2023 08:27:47 +0000 |
| parents | 57f42fad6745 |
| children | |
| files | data_manager/mash_sketch_builder.py data_manager_conf.xml |
| diffstat | 2 files changed, 5 insertions(+), 3 deletions(-) [+] |
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--- a/data_manager/mash_sketch_builder.py Wed Apr 08 03:19:13 2020 +0000 +++ b/data_manager/mash_sketch_builder.py Sun Apr 16 08:27:47 2023 +0000 @@ -59,7 +59,8 @@ parser.add_argument('--sketch-name', dest='sketch_name', help='Name for sketch') args = parser.parse_args() - data_manager_input = json.loads(open(args.data_manager_json).read()) + with open(args.data_manager_json) as fh: + data_manager_input = json.load(fh) target_directory = data_manager_input['output_data'][0]['extra_files_path'] @@ -88,7 +89,8 @@ target_directory, ) - open(args.data_manager_json, 'w').write(json.dumps(data_manager_output, sort_keys=True)) + with open(args.data_manager_json, 'w') as fh: + json.dump(data_manager_output, fh, sort_keys=True) if __name__ == "__main__":
--- a/data_manager_conf.xml Wed Apr 08 03:19:13 2020 +0000 +++ b/data_manager_conf.xml Sun Apr 16 08:27:47 2023 +0000 @@ -1,5 +1,5 @@ <data_managers> - <data_manager tool_file="data_manager/mash_sketch_builder.xml" id="mash_sketch_builder" version="2.1+galaxy0"> + <data_manager tool_file="data_manager/mash_sketch_builder.xml" id="mash_sketch_builder"> <data_table name="mash_sketches"> <output> <column name="value"/>