Mercurial > repos > iuc > data_manager_bwa_mem2_index_builder

annotate data_manager_conf.xml @ 1:a96a36c08c5b draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit 57d05675396f0b44265fb4dbc8f9f891c6073219
author iuc
date Thu, 05 Dec 2024 06:47:12 +0000
parents dfc665171492
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dfc665171492 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
parents:
diff changeset
1 <?xml version="1.0"?>
dfc665171492 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
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2 <data_managers>
dfc665171492 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
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3 <data_manager tool_file="data_manager/bwa_mem2_index_builder.xml" id="bwa_mem2_index_builder">
dfc665171492 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
parents:
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4 <data_table name="bwa_mem2_indexes">
dfc665171492 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
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5 <output>
dfc665171492 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
parents:
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6 <column name="value" />
dfc665171492 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
parents:
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7 <column name="dbkey" />
dfc665171492 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
parents:
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8 <column name="name" />
dfc665171492 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
parents:
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9 <column name="path" output_ref="out_file" >
dfc665171492 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
parents:
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10 <move type="directory" relativize_symlinks="True">
dfc665171492 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
parents:
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11 <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base -->
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a96a36c08c5b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit 57d05675396f0b44265fb4dbc8f9f891c6073219
iuc
parents: 0
diff changeset
12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">genomes/${dbkey}/bwa_mem_index/v2/${value}</target>
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dfc665171492 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
parents:
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13 </move>
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a96a36c08c5b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit 57d05675396f0b44265fb4dbc8f9f891c6073219
iuc
parents: 0
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14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/genomes/${dbkey}/bwa_mem_index/v2/${value}/${path}</value_translation>
0
dfc665171492 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
parents:
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15 <value_translation type="function">abspath</value_translation>
dfc665171492 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
parents:
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16 </column>
dfc665171492 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
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17 </output>
dfc665171492 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
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18 </data_table>
dfc665171492 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
parents:
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19 </data_manager>
dfc665171492 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem2_index_builder commit aee140ec8e26b8aa1fc2ee07a112df01c137cfb7
iuc
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20 </data_managers>