Mercurial > repos > iuc > data_manager_bowtie_index_builder
changeset 2:ddd473181942 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 8652f36a3a3838dca989426961561e81432acf4f
| author | iuc |
|---|---|
| date | Tue, 04 Apr 2017 17:48:46 -0400 |
| parents | de991e82646a |
| children | 00d807711b52 |
| files | data_manager/bowtie_index_builder.py data_manager_conf.xml tool_data_table_conf.xml.sample |
| diffstat | 3 files changed, 6 insertions(+), 5 deletions(-) [+] |
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--- a/data_manager/bowtie_index_builder.py Thu Sep 15 03:15:54 2016 -0400 +++ b/data_manager/bowtie_index_builder.py Tue Apr 04 17:48:46 2017 -0400 @@ -91,5 +91,6 @@ # save info to json file open( filename, 'wb' ).write( json.dumps( data_manager_dict ) ) + if __name__ == "__main__": main()
--- a/data_manager_conf.xml Thu Sep 15 03:15:54 2016 -0400 +++ b/data_manager_conf.xml Tue Apr 04 17:48:46 2017 -0400 @@ -1,6 +1,6 @@ <?xml version="1.0"?> <data_managers> - <data_manager tool_file="data_manager/bowtie_index_builder.xml" id="bowtie_index_builder" version="0.0.3"> + <data_manager tool_file="data_manager/bowtie_index_builder.xml" id="bowtie_index_builder" version="0.0.1"> <data_table name="bowtie_indexes"> <output> <column name="value" /> @@ -17,7 +17,7 @@ </output> </data_table> </data_manager> - <data_manager tool_file="data_manager/bowtie_color_space_index_builder.xml" id="bowtie_color_space_index_builder" version="0.0.3"> + <data_manager tool_file="data_manager/bowtie_color_space_index_builder.xml" id="bowtie_color_space_index_builder" version="0.0.1"> <data_table name="bowtie_indexes_color"> <output> <column name="value" />
--- a/tool_data_table_conf.xml.sample Thu Sep 15 03:15:54 2016 -0400 +++ b/tool_data_table_conf.xml.sample Tue Apr 04 17:48:46 2017 -0400 @@ -1,16 +1,16 @@ <tables> <!-- Locations of all fasta files under genome directory --> - <table name="all_fasta" comment_char="#"> + <table name="all_fasta" comment_char="#" allow_duplicate_entries="False"> <columns>value, dbkey, name, path</columns> <file path="tool-data/all_fasta.loc" /> </table> <!-- Locations of indexes in the Bowtie mapper format --> - <table name="bowtie_indexes" comment_char="#"> + <table name="bowtie_indexes" comment_char="#" allow_duplicate_entries="False"> <columns>value, dbkey, name, path</columns> <file path="tool-data/bowtie_indices.loc" /> </table> <!-- Locations of indexes in the Bowtie color-space mapper format --> - <table name="bowtie_indexes_color" comment_char="#"> + <table name="bowtie_indexes_color" comment_char="#" allow_duplicate_entries="False"> <columns>value, dbkey, name, path</columns> <file path="tool-data/bowtie_indices_color.loc" /> </table>