Mercurial > repos > iuc > dada2_dada
comparison dada2_dada.xml @ 1:27b384992e75 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dada2 commit a82e4981dac025c909244acd7127c215bdb519a7"
| author | iuc |
|---|---|
| date | Thu, 05 Dec 2019 22:54:35 +0000 |
| parents | 93a3cbe14318 |
| children | 4181dc15f538 |
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| 0:93a3cbe14318 | 1:27b384992e75 |
|---|---|
| 102 <test> | 102 <test> |
| 103 <param name="batch_cond|batch_select" value="no"/> | 103 <param name="batch_cond|batch_select" value="no"/> |
| 104 <param name="batch_cond|derep" value="filterAndTrim_F3D0_R1.fq.gz" ftype="fastq.gz" /> | 104 <param name="batch_cond|derep" value="filterAndTrim_F3D0_R1.fq.gz" ftype="fastq.gz" /> |
| 105 <param name="err" value="learnErrors_F3D0_R1.Rdata" ftype="dada2_errorrates" /> | 105 <param name="err" value="learnErrors_F3D0_R1.Rdata" ftype="dada2_errorrates" /> |
| 106 <output_collection name="data_collection" type="list"> | 106 <output_collection name="data_collection" type="list"> |
| 107 <element name="filterAndTrim_F3D0_R1.fq.gz" file="dada_F3D0_R1.Rdata" ftype="dada2_dada"/> | 107 <element name="filterAndTrim_F3D0_R1.fq.gz" file="dada_F3D0_R1.Rdata" ftype="dada2_dada" compare="sim_size" delta="10000"/> |
| 108 </output_collection> | 108 </output_collection> |
| 109 </test> | 109 </test> |
| 110 <!-- default, batch --> | 110 <!-- default, batch --> |
| 111 <test> | 111 <test> |
| 112 <param name="batch_cond|batch_select" value="yes"/> | 112 <param name="batch_cond|batch_select" value="yes"/> |
| 113 <param name="batch_cond|derep" value="filterAndTrim_F3D0_R1.fq.gz" ftype="fastq.gz" /> | 113 <param name="batch_cond|derep" value="filterAndTrim_F3D0_R1.fq.gz" ftype="fastq.gz" /> |
| 114 <param name="err" value="learnErrors_F3D0_R1.Rdata" ftype="dada2_errorrates" /> | 114 <param name="err" value="learnErrors_F3D0_R1.Rdata" ftype="dada2_errorrates" /> |
| 115 <output name="dada" value="dada_F3D0_R1.Rdata" ftype="dada2_dada" /> | 115 <output name="dada" value="dada_F3D0_R1.Rdata" ftype="dada2_dada" compare="sim_size" delta="10000"/> |
| 116 </test> | 116 </test> |
| 117 <!-- test non-default options --> | 117 <!-- test non-default options --> |
| 118 <test> | 118 <test> |
| 119 <param name="batch_cond|batch_select" value="no"/> | 119 <param name="batch_cond|batch_select" value="no"/> |
| 120 <param name="batch_cond|derep" value="filterAndTrim_F3D0_R1.fq.gz" ftype="fastq.gz" /> | 120 <param name="batch_cond|derep" value="filterAndTrim_F3D0_R1.fq.gz" ftype="fastq.gz" /> |
| 121 <param name="batch_cond|pool" value="pseudo"/> | 121 <param name="batch_cond|pool" value="pseudo"/> |
| 122 <param name="err" value="learnErrors_F3D0_R1.Rdata" ftype="dada2_errorrates" /> | 122 <param name="err" value="learnErrors_F3D0_R1.Rdata" ftype="dada2_errorrates" /> |
| 123 <output_collection name="data_collection" type="list"> | 123 <output_collection name="data_collection" type="list"> |
| 124 <element name="filterAndTrim_F3D0_R1.fq.gz" file="dada_F3D0_R1.Rdata" ftype="dada2_dada"/> | 124 <element name="filterAndTrim_F3D0_R1.fq.gz" file="dada_F3D0_R1.Rdata" ftype="dada2_dada" compare="sim_size" delta="10000"/> |
| 125 </output_collection> | 125 </output_collection> |
| 126 </test> | 126 </test> |
| 127 </tests> | 127 </tests> |
| 128 <help><![CDATA[ | 128 <help><![CDATA[ |
| 129 Description | 129 Description |