Mercurial > repos > iuc > crossmap_vcf
changeset 9:30d4d3bbe0a1 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit 07b2b6b9b288fd4ad368fc7a4f0143bb73e9edd9"
author | iuc |
---|---|
date | Tue, 16 Nov 2021 19:11:36 +0000 |
parents | 4a9c59111f54 |
children | 1e9997ca9e14 |
files | crossmap_vcf.xml |
diffstat | 1 files changed, 3 insertions(+), 1 deletions(-) [+] |
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--- a/crossmap_vcf.xml Thu Jul 15 16:16:09 2021 +0000 +++ b/crossmap_vcf.xml Tue Nov 16 19:11:36 2021 +0000 @@ -10,6 +10,8 @@ <command detect_errors="aggressive"><![CDATA[ #set $input_file = str($seq_source.input) +ln -s '${seq_source.input_fasta}' 'genome.fasta' && + CrossMap.py vcf #if $seq_source.index_source_s == "cached" @@ -20,7 +22,7 @@ #end if '${input_file}' -'${seq_source.input_fasta}' +'genome.fasta' $no_comp_alleles output ]]></command>