changeset 2:bd409bbd287f draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/concoct commit 77dea70f156d56c83b6851b61dc997d2b344bdc9
author iuc
date Fri, 01 Jul 2022 14:10:59 +0000
parents 1f4286d836a3
children 4338452cbfb9
files concoct.xml macros.xml test-data/process_log.txt
diffstat 3 files changed, 12 insertions(+), 12 deletions(-) [+]
line wrap: on
line diff
--- a/concoct.xml	Sun Mar 13 08:41:50 2022 +0000
+++ b/concoct.xml	Fri Jul 01 14:10:59 2022 +0000
@@ -77,7 +77,7 @@
             <param name="coverage_file" value="input1.tabular" ftype="tabular"/>
             <param name="composition_file" value="input1.fa.gz" ftype="fasta.gz"/>
             <param name="output_process_log" value="yes"/>
-            <output name="process_log" file="process_log.txt" ftype="txt" compare="contains"/>
+            <output name="process_log" file="process_log.txt" ftype="txt" compare="re_match"/>
             <output name="output_pca_components" ftype="tabular">
                 <assert_contents>
                     <has_size value="367636"/>
--- a/macros.xml	Sun Mar 13 08:41:50 2022 +0000
+++ b/macros.xml	Fri Jul 01 14:10:59 2022 +0000
@@ -1,6 +1,6 @@
 <macros>
     <token name="@TOOL_VERSION@">1.0.0</token>
-    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@VERSION_SUFFIX@">1</token>
     <token name="@PROFILE@">21.01</token>
     <xml name="requirements">
         <requirements>
--- a/test-data/process_log.txt	Sun Mar 13 08:41:50 2022 +0000
+++ b/test-data/process_log.txt	Fri Jul 01 14:10:59 2022 +0000
@@ -1,10 +1,10 @@
-Results created at
-Successfully loaded composition data.
-Successfully loaded coverage data.
-Performed PCA, resulted in 154 dimensions
-Wrote PCA transformed file.
-Wrote PCA components file.
-PCA transformed data.
-Will call vbgmm with parameters: outdir/, 400, 1000, 1
-Wrote assign file.
-CONCOCT Finished
+.*:Results created at
+.*:Successfully loaded composition data\.
+.*:Successfully loaded coverage data\.
+.*:Performed PCA, resulted in 154 dimensions
+.*:Wrote PCA transformed file\.
+.*:Wrote PCA components file\.
+.*:PCA transformed data\.
+.*:Will call vbgmm with parameters: outdir/, 400, 1000, \d+
+.*:Wrote assign file\.
+.*:CONCOCT Finished