Mercurial > repos > iuc > chira_extract

changeset 19:a6a46221f3f9 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chira commit 28963347255f1df6efaa8991ad9fc17f86b30a73"
author iuc
date Fri, 24 Sep 2021 06:46:13 +0000
parents 5e11f7180cd0
children fc32d10e930c
files chira_extract.xml
diffstat 1 files changed, 3 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/chira_extract.xml	Tue Aug 31 07:49:22 2021 +0000
+++ b/chira_extract.xml	Fri Sep 24 06:46:13 2021 +0000
@@ -9,7 +9,9 @@
         #set $genomic_fasta = ''
         #if str($annotation.annot_choice) == "yes":
             #if str($annotation.fasta_source.fasta_source_selector) == 'history':
-                #set $genomic_fasta = $annotation.fasta_source.fasta
+                ## Avoid writing FASTA index to inputdir by symlinking 
+                ln -s '${$annotation.fasta_source.fasta}' genome.fa &&
+                #set $genomic_fasta = 'genome.fa'
             #else
                 #set $genomic_fasta = $annotation.fasta_source.fasta_id.fields.path
             #end if