Mercurial > repos > iuc > cat_contigs
changeset 1:f5d2f8a27477 draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cat commit b6c674376eade4fdf9ffb31380f6689ede84a091"
| author | iuc |
|---|---|
| date | Wed, 08 Jan 2020 18:01:18 +0000 |
| parents | 2feaf3d2805b |
| children | 3b5e95687bd2 |
| files | cat_contigs.xml macros.xml |
| diffstat | 2 files changed, 7 insertions(+), 3 deletions(-) [+] |
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--- a/cat_contigs.xml Tue Dec 10 21:02:47 2019 +0000 +++ b/cat_contigs.xml Wed Jan 08 18:01:18 2020 +0000 @@ -1,4 +1,4 @@ -<tool id="cat_contigs" name="CAT contigs" version="@VERSION@.0"> +<tool id="cat_contigs" name="CAT contigs" version="@VERSION@.1"> <description>annotate with taxonomic classification</description> <macros> <import>macros.xml</import> @@ -20,7 +20,7 @@ <param name="contigs_fasta" type="data" format="fasta" label="Contigs fasta"/> <expand macro="cat_db" /> <expand macro="use_intermediates" /> - <expand macro="custom_settings" /> + <expand macro="custom_settings_contigs" /> <expand macro="diamond_options" /> <expand macro="add_names" /> <expand macro="summarise" />
--- a/macros.xml Tue Dec 10 21:02:47 2019 +0000 +++ b/macros.xml Wed Jan 08 18:01:18 2020 +0000 @@ -77,7 +77,11 @@ #end if --out_prefix 'cat_output' ]]></token> - <xml name="custom_settings"> + <xml name="custom_settings_bins"> + <param argument="--range" type="integer" value="5" min="0" max="49" label="range"/> + <param argument="--fraction" type="float" value="0.3" min="0" max="0.99" label="fraction"/> + </xml> + <xml name="custom_settings_contigs"> <param argument="--range" type="integer" value="10" min="0" max="49" label="range"/> <param argument="--fraction" type="float" value="0.5" min="0" max="0.99" label="fraction"/> </xml>