Mercurial > repos > iuc > bioext_bealign

comparison bealign.xml @ 5:b60b6e82b9c6 draft

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"planemo upload for repository https://github.com/davebx/bioext-gx/ commit c21521441846e419a69366ee10a30aa828573095"
author iuc
date Fri, 29 Oct 2021 18:10:00 +0000
parents 2859c35fa174
children 3628c36b3207
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4:2859c35fa174 5:b60b6e82b9c6
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="bioext_bealign" name="Align sequences" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> 2 <tool id="bioext_bealign" name="Align sequences" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
3 <description>to a reference using a codon alignment algorithm</description> 3 <description>to a reference using a codon alignment algorithm</description>
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 <token name="@VERSION_SUFFIX@">2</token> 6 <token name="@VERSION_SUFFIX@">0</token>
7 </macros> 7 </macros>
8 <expand macro="requirements"> 8 <expand macro="requirements">
9 <requirement type="package" version="5.1.0">gawk</requirement> 9 <requirement type="package" version="5.1.0">gawk</requirement>
10 <requirement type="package" version="1.13">samtools</requirement> 10 <requirement type="package" version="1.14">samtools</requirement>
11 </expand> 11 </expand>
12 <version_command>bealign --version</version_command> 12 <version_command>bealign --version</version_command>
13 <command detect_errors="exit_code"> 13 <command detect_errors="exit_code">
14 <![CDATA[ 14 <![CDATA[
15 ## Some downstream tools, such as the TN-93 clustering tool and RAxML, might 15 ## Some downstream tools, such as the TN-93 clustering tool and RAxML, might