Mercurial > repos > iuc > bedtools
changeset 13:bdb4509d9482 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit e8e971905f5fce11a99d51b1399af45288389d76
| author | iuc |
|---|---|
| date | Thu, 21 May 2015 22:48:31 -0400 |
| parents | 542d2008a462 |
| children | 38516915ccaf |
| files | macros.xml mapBed.xml shuffleBed.xml |
| diffstat | 3 files changed, 5 insertions(+), 4 deletions(-) [+] |
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--- a/macros.xml Mon May 04 22:47:15 2015 -0400 +++ b/macros.xml Thu May 21 22:48:31 2015 -0400 @@ -90,7 +90,7 @@ </xml> <xml name="choose_column"> - <param name="col" type="data_column" data_ref="input" label="Specify the column(s) that should be summarized" help="(-c)" /> + <param name="col" type="data_column" data_ref="inputA" label="Specify the column(s) that should be summarized" help="(-c)" /> </xml> <token name="@C_AND_O_ARGUMENT@">
--- a/mapBed.xml Mon May 04 22:47:15 2015 -0400 +++ b/mapBed.xml Thu May 21 22:48:31 2015 -0400 @@ -49,7 +49,7 @@ <param name="inputA" value="mapBed1.bed" ftype="bed" /> <param name="inputB" value="mapBed2.bed" ftype="bed" /> <repeat name="c_and_o_argument_repeat"> - <param name="cols" value="5" /> + <param name="col" value="5" /> <param name="operation" value="mean" /> </repeat> <output name="output" file="mapBed_result1.bed" ftype="bed" /> @@ -67,7 +67,7 @@ <param name="inputA" value="mapBed1.bed" ftype="bed" /> <param name="inputB" value="mapBed2.bed" ftype="bed" /> <repeat name="c_and_o_argument_repeat"> - <param name="cols" value="5" /> + <param name="col" value="5" /> <param name="operation" value="collapse" /> </repeat> <param name="strand" value="-S" /> @@ -77,7 +77,7 @@ <param name="inputA" value="mapBed1.bed" ftype="bed" /> <param name="inputB" value="mapBed2.bed" ftype="bed" /> <repeat name="c_and_o_argument_repeat"> - <param name="cols" value="5" /> + <param name="col" value="5" /> <param name="operation" value="collapse" /> </repeat> <param name="strand" value="-s" />
--- a/shuffleBed.xml Mon May 04 22:47:15 2015 -0400 +++ b/shuffleBed.xml Thu May 21 22:48:31 2015 -0400 @@ -42,6 +42,7 @@ <option value="not_be">Coordinates in which features from -i should not be placed?</option> <option value="be">coordinates in which features from -i should be placed?</option> </param> + <when value="no" /> <when value="not_be"> <param name="excl" type="data" format="bed" label="Choose File" /> <expand macro="overlap" />