Mercurial > repos > iuc > bedtools
changeset 51:b4cf5fca8773 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit e2a10eeee8765ba6cf03847562e56cdaeaf4ba5c"
author | iuc |
---|---|
date | Thu, 05 Sep 2019 19:34:55 -0400 |
parents | df28283b3778 |
children | 9a9f1a7abf54 |
files | bamToBed.xml |
diffstat | 1 files changed, 1 insertions(+), 1 deletions(-) [+] |
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--- a/bamToBed.xml Mon Apr 29 05:54:22 2019 -0400 +++ b/bamToBed.xml Thu Sep 05 19:34:55 2019 -0400 @@ -9,7 +9,7 @@ <expand macro="stdio" /> <command><![CDATA[ #if $input.extension == 'bam' and $option == "-bedpe": - samtools sort -n '${input}' ./input && + samtools sort -n -T "\${TMPDIR:-.}" '${input}' ./input && #else ln -s '${input}' ./input.bam && #end if