Mercurial > repos > iuc > bedtools
changeset 12:542d2008a462 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 344140b8df53b8b7024618bb04594607a045c03a
| author | iuc |
|---|---|
| date | Mon, 04 May 2015 22:47:15 -0400 |
| parents | 76c128f4cef9 |
| children | bdb4509d9482 |
| files | macros.xml |
| diffstat | 1 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/macros.xml Wed Apr 29 22:46:52 2015 -0400 +++ b/macros.xml Mon May 04 22:47:15 2015 -0400 @@ -4,7 +4,6 @@ <requirement type="package" version="2.22">bedtools</requirement> <yield/> </requirements> - <version_command>bedtools --version</version_command> </xml> <token name="@WRAPPER_VERSION@">2.22</token> <xml name="stdio"> @@ -16,6 +15,7 @@ <regex match="Error:" /> <regex match="Exception:" /> </stdio> + <version_command>bedtools --version</version_command> </xml> <xml name="reciprocal"> <param name="reciprocal" type="boolean" checked="false" truevalue="-r" falsevalue="" @@ -45,8 +45,8 @@ </conditional> </xml> <xml name="split"> - <param name="split" type="boolean" checked="false" truevalue="-split" falsevalue="" - label="Treat split/spliced BAM or BED12 entries as distinct BED intervals when computing coverage." + <param name="split" type="boolean" checked="false" truevalue="-split" falsevalue="" + label="Treat split/spliced BAM or BED12 entries as distinct BED intervals when computing coverage." help="If set, the coverage will be calculated based the spliced intervals only. For BAM files, this inspects the CIGAR N operation to infer the blocks for computing coverage. For BED12 files, this inspects the BlockCount, BlockStarts, and BlockEnds fields (i.e., columns 10,11,12). If this option is not set, coverage will be calculated based on the interval's START/END coordinates, and would include introns in the case of RNAseq data. (-split)" /> </xml> <xml name="genome">