Mercurial > repos > iuc > bcftools_mpileup
changeset 12:bd0644ac3ab9 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit af43d9cf6824f88726900857116f333ff4cdd336"
| author | iuc |
|---|---|
| date | Sat, 15 Jan 2022 12:56:29 +0000 |
| parents | 1e7f30dbf7e7 |
| children | 3b842ed1cf33 |
| files | bcftools_mpileup.xml |
| diffstat | 1 files changed, 3 insertions(+), 3 deletions(-) [+] |
line wrap: on
line diff
--- a/bcftools_mpileup.xml Thu Oct 14 09:40:35 2021 +0000 +++ b/bcftools_mpileup.xml Sat Jan 15 12:56:29 2022 +0000 @@ -1,7 +1,6 @@ <?xml version='1.0' encoding='utf-8'?> -<tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@TOOL_VERSION@"> +<tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@TOOL_VERSION@+galaxy1"> <description>Generate VCF or BCF containing genotype likelihoods for one or multiple alignment (BAM or CRAM) files</description> - <expand macro="bio_tools" /> <macros> <token name="@EXECUTABLE@">mpileup</token> <import>macros.xml</import> @@ -19,6 +18,7 @@ <option value="1024">The read is a PCR or optical duplicate</option> </xml> </macros> + <expand macro="bio_tools" /> <expand macro="requirements"> <expand macro="samtools_requirement"/> </expand> @@ -223,7 +223,7 @@ </section> <section name="sec_filtering" expanded="false" title="Input Filtering Options"> - <param name="max_reads_per_bam" type="integer" value="250" max="1024" min="1" label="Max reads per BAM" help="--max-depth; default=250"/> + <param name="max_reads_per_bam" type="integer" value="250" min="1" label="Max reads per BAM" help="--max-depth; default=250"/> <param name="ignore_overlaps" type="boolean" truevalue="-x" falsevalue="" checked="False" label="Disable read-pair overlap detection" help="--ignore-overlaps"/> <param name="skip_anomalous_read_pairs" type="boolean" truevalue="-A" falsevalue="" checked="False" label="Do not skip anomalous read pairs in variant calling" help="--count-orphans"/> <conditional name="filter_by_flags">