Mercurial > repos > iuc > anndata_import

changeset 1:ac832f969c67 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/anndata/ commit 8ef5f7c6f8728608a3f05bb51e11b642b84a05f5"
author iuc
date Wed, 16 Oct 2019 06:20:05 -0400
parents c6a4df4d3d6c
children e239534e003a
files macros.xml test-data/manipulate.add_annotation_obs.h5ad test-data/manipulate.add_annotation_var.h5ad test-data/manipulate.filter_obs_key.h5ad test-data/manipulate.filter_var_index.h5ad test-data/obs_add_annotation.tabular test-data/pp.neighbors_umap_euclidean.recipe_weinreb17.paul15_subsample.h5ad test-data/pp.pca.krumsiek11.h5ad test-data/tl.diffmap.h5ad test-data/tl.draw_graph.h5ad test-data/tl.paga.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.h5ad test-data/tl.rank_genes_groups.krumsiek11.h5ad test-data/tl.tsne.h5ad test-data/tl.umap.h5ad test-data/var_add_annotation.tabular
diffstat 15 files changed, 655 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Wed Apr 10 03:20:36 2019 -0400
+++ b/macros.xml	Wed Oct 16 06:20:05 2019 -0400
@@ -1,11 +1,11 @@
 <macros>
-    <token name="@VERSION@">0.6.19</token>
+    <token name="@VERSION@">0.6.22.post1</token>
     <token name="@GALAXY_VERSION@">galaxy0</token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@VERSION@">anndata</requirement>
-            <requirement type="package" version="1.4">scanpy</requirement>
             <requirement type="package" version="2.0.17">loompy</requirement>
+            <requirement type="package" version="2.9.0">h5py</requirement>
             <yield />
         </requirements>
     </xml>
Binary file test-data/manipulate.add_annotation_obs.h5ad has changed
Binary file test-data/manipulate.add_annotation_var.h5ad has changed
Binary file test-data/manipulate.filter_obs_key.h5ad has changed
Binary file test-data/manipulate.filter_var_index.h5ad has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/obs_add_annotation.tabular	Wed Oct 16 06:20:05 2019 -0400
@@ -0,0 +1,641 @@
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Binary file test-data/pp.neighbors_umap_euclidean.recipe_weinreb17.paul15_subsample.h5ad has changed
Binary file test-data/pp.pca.krumsiek11.h5ad has changed
Binary file test-data/tl.diffmap.h5ad has changed
Binary file test-data/tl.draw_graph.h5ad has changed
Binary file test-data/tl.paga.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.h5ad has changed
Binary file test-data/tl.rank_genes_groups.krumsiek11.h5ad has changed
Binary file test-data/tl.tsne.h5ad has changed
Binary file test-data/tl.umap.h5ad has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/var_add_annotation.tabular	Wed Oct 16 06:20:05 2019 -0400
@@ -0,0 +1,12 @@
+annot1	annot2
+1	a
+2	b
+3	c
+4	d
+5	e
+6	f
+7	g
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+10	j
+11	k