Mercurial > repos > iuc > aegean_parseval

annotate test-data/parseval_output_test5.html @ 0:492ee6657534 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
author iuc
date Sun, 03 Jan 2021 14:55:16 +0000
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
1 <!doctype html>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
2 <html lang="en">
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
3 <head>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
4 <meta charset="utf-8" />
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
5 <title>ParsEval Summary</title>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
6 <link rel="stylesheet" type="text/css" href="parseval.css" />
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
7 <script type="text/javascript" language="javascript" src="vendor/jquery.js"></script>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
8 <script type="text/javascript" language="javascript" src="vendor/jquery.dataTables.js"></script>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
9 <script type="text/javascript">
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
10 $(document).ready(function() {
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
11 $('#seqlist').dataTable( {
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
12 "sScrollY": "400px",
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
13 "bPaginate": false,
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
14 "bScrollCollapse": true,
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
15 "bSort": false,
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
16 "bFilter": false,
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
17 "bInfo": false
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
18 });
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
19 } );
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
20 </script>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
21 </head>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
22 <body>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
23 <div id="content">
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
24 <h1>ParsEval Summary</h1>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
25 <pre class="command">
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
26 Started: 03 Jan 2021, 02:54PM
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
27 Reference annotations: /tmp/tmpok6hen4l/files/3/2/4/dataset_324b4f7b-e4b1-45d0-a543-be63ae960b43.dat
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
28 Prediction annotations: /tmp/tmpok6hen4l/files/b/4/0/dataset_b4066664-7777-4c30-9e37-820e44194617.dat
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
29 Executing command: parseval --delta 10 --maxtrans 10 -w -f html -o /tmp/tmpok6hen4l/job_working_directory/000/46/working/dataset_1f07132b-8f99-4a03-8305-5c4c5a68089c_files /tmp/tmpok6hen4l/files/3/2/4/dataset_324b4f7b-e4b1-45d0-a543-be63ae960b43.dat /tmp/tmpok6hen4l/files/b/4/0/dataset_b4066664-7777-4c30-9e37-820e44194617.dat </pre>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
30
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
31 <h2>Sequences compared</h2>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
32 <p class="indent">Click on a sequence ID below to see comparison results for individual loci.</p>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
33 <table id="seqlist" class="indent">
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
34 <thead>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
35 <tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
36 <th>Sequence</th>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
37 <th>Refr genes</th>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
38 <th>Pred genes</th>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
39 <th>Loci</th>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
40 </tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
41 </thead>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
42 <tbody>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
43 <tr><td><a href="Chr1/index.html">Chr1</a></td><td>4</td><td>4</td><td>4</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
44 </tbody>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
45 </table>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
46
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
47 <h2>Gene loci <span class="tooltip">[?]<span class="tooltip_text">If a gene annotation overlaps with another gene annotation, those annotations are associated with the same gene locus. See <a target="_blank" href="http://aegean.readthedocs.io/en/latest/loci.html">this page</a> for a formal definition of a locus annotation.</span></span></h2>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
48 <table class="table_normal">
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
49 <tr><td>shared</td><td>4</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
50 <tr><td>unique to reference</td><td>0</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
51 <tr><td>unique to prediction</td><td>0</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
52 <tr><th class="right-align">Total</th><td>4</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
53 </table>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
54
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
55 <h2>Reference annotations</h2>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
56 <table class="table_normal">
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
57 <tr><td>genes</td><td>4</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
58 <tr class="cell_small"><td class="cell_indent">average per locus</td><td>1.000</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
59 <tr><td>transcripts</td><td>5</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
60 <tr class="cell_small"><td class="cell_indent">average per locus</td><td>1.250</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
61 <tr class="cell_small"><td class="cell_indent">average per gene</td><td>1.250</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
62 </table>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
63
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
64 <h2>Prediction annotations</h2>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
65 <table class="table_normal">
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
66 <tr><td>genes</td><td>4</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
67 <tr class="cell_small"><td class="cell_indent">average per locus</td><td>1.000</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
68 <tr><td>transcripts</td><td>5</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
69 <tr class="cell_small"><td class="cell_indent">average per locus</td><td>1.250</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
70 <tr class="cell_small"><td class="cell_indent">average per gene</td><td>1.250</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
71 </table>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
72
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
73 <h2>Comparisons</h2>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
74 <table class="comparisons">
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
75 <tr><th>Total comparisons</th><th>5</th></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
76 <tr><td><a href="perfectmatches.html">(+)</a> perfect matches <span class="tooltip"><span class="small_tooltip">[?]</span><span class="tooltip_text">Prediction transcripts (exons, coding sequences, and UTRs) line up perfectly with reference transcripts.</span></span></td><td>5 (100.0%)</tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
77 <tr class="cell_small"><td class="cell_indent">average length</td><td>3629.80 bp</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
78 <tr class="cell_small"><td class="cell_indent">average # refr exons</td><td>7.60</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
79 <tr class="cell_small"><td class="cell_indent">average # pred exons</td><td>7.60</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
80 <tr class="cell_small"><td class="cell_indent">average refr CDS length</td><td>449.40 aa</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
81 <tr class="cell_small"><td class="cell_indent">average pred CDS length</td><td>449.40 aa</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
82 <tr><td>(+) perfect matches with mislabeled UTRs <span class="tooltip"><span class="small_tooltip">[?]</span><span class="tooltip_text">5'/3' orientation of UTRs is reversed between reference and prediction, but a perfect match in all other aspects.</span></span></td><td>0 (0.0%)</tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
83 <tr><td>(+) CDS structure matches <span class="tooltip"><span class="small_tooltip">[?]</span><span class="tooltip_text">Not a perfect match, but prediction coding sequence(s) line up perfectly with reference coding sequence(s).</span></span></td><td>0 (0.0%)</tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
84 <tr><td>(+) exon structure matches <span class="tooltip"><span class="small_tooltip">[?]</span><span class="tooltip_text">Not a perfect match or CDS match, but prediction exon structure is identical to reference exon structure.</span></span></td><td>0 (0.0%)</tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
85 <tr><td>(+) UTR structure matches <span class="tooltip"><span class="small_tooltip">[?]</span><span class="tooltip_text">Not a perfect match, CDS match, or exon structure match, but prediction UTRs line up perfectly with reference UTRs.</span></span></td><td>0 (0.0%)</tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
86 <tr><td>(+) non-matches <span class="tooltip"><span class="small_tooltip">[?]</span><span class="tooltip_text">Differences in CDS, exon, and UTR structure.</span></span></td><td>0 (0.0%)</tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
87 </table>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
88
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
89 <h3>CDS structure comparison</h3>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
90 <table class="table_normal table_extra_indent">
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
91 <tr><td>reference CDS segments</td><td>35</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
92 <tr class="cell_small"><td class="cell_indent">match prediction</td><td>35 (100.0%)</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
93 <tr class="cell_small"><td class="cell_indent">don't match prediction</td><td>0 (0.0%)</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
94 <tr><td>prediction CDS segments</td><td>35</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
95 <tr class="cell_small"><td class="cell_indent">match prediction</td><td>35 (100.0%)</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
96 <tr class="cell_small"><td class="cell_indent">don't match prediction</td><td>0 (0.0%)</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
97 <tr><td>Sensitivity</td><td>1.000</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
98 <tr><td>Specificity</td><td>1.000</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
99 <tr><td>F1 score</td><td>1.000</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
100 <tr><td>Annotation edit distance</td><td>0.000</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
101 </table>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
102
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
103 <h3>Exon structure comparison</h3>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
104 <table class="table_normal table_extra_indent">
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
105 <tr><td>reference exons</td><td>38</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
106 <tr class="cell_small"><td class="cell_indent">match prediction</td><td>38 (100.0%)</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
107 <tr class="cell_small"><td class="cell_indent">don't match prediction</td><td>0 (0.0%)</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
108 <tr><td>prediction exons</td><td>38</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
109 <tr class="cell_small"><td class="cell_indent">match prediction</td><td>38 (100.0%)</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
110 <tr class="cell_small"><td class="cell_indent">don't match prediction</td><td>0 (0.0%)</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
111 <tr><td>Sensitivity</td><td>1.000</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
112 <tr><td>Specificity</td><td>1.000</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
113 <tr><td>F1 score</td><td>1.000</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
114 <tr><td>Annotation edit distance</td><td>0.000</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
115 </table>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
116
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
117 <h3>UTR structure comparison</h3>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
118 <table class="table_normal table_extra_indent">
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
119 <tr><td>reference UTR segments</td><td>12</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
120 <tr class="cell_small"><td class="cell_indent">match prediction</td><td>12 (100.0%)</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
121 <tr class="cell_small"><td class="cell_indent">don't match prediction</td><td>0 (0.0%)</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
122 <tr><td>prediction UTR segments</td><td>12</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
123 <tr class="cell_small"><td class="cell_indent">match prediction</td><td>12 (100.0%)</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
124 <tr class="cell_small"><td class="cell_indent">don't match prediction</td><td>0 (0.0%)</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
125 <tr><td>Sensitivity</td><td>1.000</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
126 <tr><td>Specificity</td><td>1.000</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
127 <tr><td>F1 score</td><td>1.000</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
128 <tr><td>Annotation edit distance</td><td>0.000</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
129 </table>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
130
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
131 <h3>Nucleotide-level comparison</h3>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
132 <table class="table_wide table_extra_indent">
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
133 <tr><th>&nbsp;</th><th>CDS</th><th>UTRs</th><th>Overall</th></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
134 <tr><th class="left-align">matching coefficient</th><td>1.000</td><td>1.000</td><td>1.000</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
135 <tr><th class="left-align">correlation coefficient</th><td>1.000</td><td>1.000</td><td>--</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
136 <tr><th class="left-align">sensitivity</th><td>1.000</td><td>1.000</td><td>--</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
137 <tr><th class="left-align">specificity</th><td>1.000</td><td>1.000</td><td>--</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
138 <tr><th class="left-align">F1 score</th><td>1.000</td><td>1.000</td><td>--</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
139 <tr><th class="left-align">annotation edit distance</th><td>0.000</td><td>0.000</td><td>--</td></tr>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
140 </table>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
141
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
142 <p class="footer">
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
143 Generated by <a href="https://github.com/standage/AEGeAn/releases/tag/v0.16.0">AEGeAn v0.16.0 (stable )</a>.<br />
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
144 Copyright © 2016 <a href="http://aegean.readthedocs.io/en/latest/contrib.html">AEGeAn authors</a>.<br />
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
145 See <a href="LICENSE">LICENSE</a> for details. </p>
492ee6657534 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/aegean commit e6c01517075cab35e620fe1bbdb5fd68e4d1359f"
iuc
parents:
diff changeset
146 </div> </body> </html>