Mercurial > repos > iuc > abundance_estimates_to_matrix
view tool_dependencies.xml @ 0:40344713a362 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit baff3f60cf4a039a74091e24b3453f4499cfaf02
author | iuc |
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date | Wed, 27 Jul 2016 08:43:07 -0400 |
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<?xml version="1.0"?> <tool_dependency> <package name="trinity" version="2.2.0"> <repository changeset_revision="58d411f36881" name="package_trinity_2_2_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> <package name="bowtie" version="1.1.2"> <repository changeset_revision="8584a4574ab1" name="package_bowtie_1_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> <package name="bowtie2" version="2.2.6"> <repository changeset_revision="9d2f1e2f5919" name="package_bowtie_2_2_6" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> <package name="samtools" version="1.2"> <repository changeset_revision="5b7172f9b230" name="package_samtools_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> <package name="bioconductor-edger" version="3.14.0"> <repository changeset_revision="d1ebebe12abc" name="package_bioconductor_edger_3_14_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> <package name="rsem" version="1.2.28"> <repository changeset_revision="987ca85aead4" name="package_rsem_1_2_28" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> <package name="eXpress" version="1.5.1"> <repository changeset_revision="690e3e7d202b" name="package_express_1_5_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> <package name="bioconductor-limma" version="3.28.10"> <repository changeset_revision="90b7c39ce562" name="package_bioconductor_limma_3_28_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> <package name="deseq2" version="1.10.0"> <repository changeset_revision="5d9def29ff0b" name="package_deseq2_1_10_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> <set_environment version="1.0"> <environment_variable action="set_to" name="TRINITY_MEM_OPTIONS">'--max_memory 30G --bflyHeapSpaceMax 30G'</environment_variable> </set_environment> </tool_dependency>