Mercurial > repos > iuc > abundance_estimates_to_matrix
comparison tool_dependencies.xml @ 0:40344713a362 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinity commit baff3f60cf4a039a74091e24b3453f4499cfaf02
| author | iuc |
|---|---|
| date | Wed, 27 Jul 2016 08:43:07 -0400 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:40344713a362 |
|---|---|
| 1 <?xml version="1.0"?> | |
| 2 <tool_dependency> | |
| 3 <package name="trinity" version="2.2.0"> | |
| 4 <repository changeset_revision="58d411f36881" name="package_trinity_2_2_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> | |
| 5 </package> | |
| 6 <package name="bowtie" version="1.1.2"> | |
| 7 <repository changeset_revision="8584a4574ab1" name="package_bowtie_1_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> | |
| 8 </package> | |
| 9 <package name="bowtie2" version="2.2.6"> | |
| 10 <repository changeset_revision="9d2f1e2f5919" name="package_bowtie_2_2_6" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> | |
| 11 </package> | |
| 12 <package name="samtools" version="1.2"> | |
| 13 <repository changeset_revision="5b7172f9b230" name="package_samtools_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> | |
| 14 </package> | |
| 15 <package name="bioconductor-edger" version="3.14.0"> | |
| 16 <repository changeset_revision="d1ebebe12abc" name="package_bioconductor_edger_3_14_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> | |
| 17 </package> | |
| 18 <package name="rsem" version="1.2.28"> | |
| 19 <repository changeset_revision="987ca85aead4" name="package_rsem_1_2_28" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> | |
| 20 </package> | |
| 21 <package name="eXpress" version="1.5.1"> | |
| 22 <repository changeset_revision="690e3e7d202b" name="package_express_1_5_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> | |
| 23 </package> | |
| 24 <package name="bioconductor-limma" version="3.28.10"> | |
| 25 <repository changeset_revision="90b7c39ce562" name="package_bioconductor_limma_3_28_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> | |
| 26 </package> | |
| 27 <package name="deseq2" version="1.10.0"> | |
| 28 <repository changeset_revision="5d9def29ff0b" name="package_deseq2_1_10_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> | |
| 29 </package> | |
| 30 <set_environment version="1.0"> | |
| 31 <environment_variable action="set_to" name="TRINITY_MEM_OPTIONS">'--max_memory 30G --bflyHeapSpaceMax 30G'</environment_variable> | |
| 32 </set_environment> | |
| 33 </tool_dependency> |