Mercurial > repos > iracooke > xtandem
changeset 2:cc7c5f92759e
Fix
author | Ira Cooke <iracooke@gmail.com> |
---|---|
date | Thu, 06 Jun 2013 15:38:15 +1000 |
parents | 0df91f1ff477 |
children | ccf5e8515552 |
files | repository_dependencies.xml tandem.xml tool_dependencies.xml |
diffstat | 3 files changed, 7 insertions(+), 7 deletions(-) [+] |
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--- a/repository_dependencies.xml Mon Jun 03 16:28:18 2013 +1000 +++ b/repository_dependencies.xml Thu Jun 06 15:38:15 2013 +1000 @@ -1,5 +1,5 @@ <?xml version="1.0"?> <repositories description="Proteomics datatypes and the TPP"> <repository toolshed="http://testtoolshed.g2.bx.psu.edu" name="proteomics_datatypes" owner="iracooke" changeset_revision="7101f7e4b00b"/> - <repository toolshed="http://testtoolshed.g2.bx.psu.edu" name="protk_trans_proteomic_pipeline" owner="iracooke" changeset_revision="fe02e5e93877"/> + <repository toolshed="http://testtoolshed.g2.bx.psu.edu" name="protk_trans_proteomic_pipeline" owner="iracooke" changeset_revision="5894fb541275"/> </repositories>
--- a/tandem.xml Mon Jun 03 16:28:18 2013 +1000 +++ b/tandem.xml Thu Jun 06 15:38:15 2013 +1000 @@ -1,7 +1,7 @@ <tool id="proteomics_search_tandem_1" name="X!Tandem MSMS Search" version="1.0.1"> <requirements> - <requirement type="package" version="1.2.0">galaxy_protk</requirement> + <requirement type="package" version="1.2.2">galaxy_protk</requirement> <requirement type="package" version="4.6.1">trans_proteomic_pipeline</requirement> </requirements> @@ -9,8 +9,8 @@ <command> #if $database.source_select=="built_in": - rvm 1.9.3@protk-1.2.0 do tandem_search.rb -d $database.dbkey - #else #rvm 1.9.3@protk-1.2.0 do tandem_search.rb -d $database.fasta_file + rvm 1.9.3@protk-1.2.2 do tandem_search.rb -d $database.dbkey + #else #rvm 1.9.3@protk-1.2.2 do tandem_search.rb -d $database.fasta_file #end if --var-mods='
--- a/tool_dependencies.xml Mon Jun 03 16:28:18 2013 +1000 +++ b/tool_dependencies.xml Thu Jun 06 15:38:15 2013 +1000 @@ -1,10 +1,10 @@ <?xml version="1.0"?> <tool_dependency> - <package name="galaxy_protk" version="1.2.0"> - <repository toolshed="http://testtoolshed.g2.bx.psu.edu" name="galaxy_protk" owner="iracooke" changeset_revision="8bb76a3347c9" prior_installation_required="True"/> + <package name="galaxy_protk" version="1.2.2"> + <repository toolshed="http://testtoolshed.g2.bx.psu.edu" name="galaxy_protk" owner="iracooke" changeset_revision="32c643142290" prior_installation_required="True"/> </package> <package name="trans_proteomic_pipeline" version="4.6.1"> - <repository toolshed="http://testtoolshed.g2.bx.psu.edu" name="protk_trans_proteomic_pipeline" owner="iracooke" changeset_revision="fe02e5e93877"/> + <repository toolshed="http://testtoolshed.g2.bx.psu.edu" name="protk_trans_proteomic_pipeline" owner="iracooke" changeset_revision="5894fb541275"/> </package> </tool_dependency>