Mercurial > repos > iracooke > proteomics_datatypes

changeset 1:4198976f4e5e draft

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Uploaded
author iracooke
date Mon, 10 Mar 2014 19:38:57 -0400
parents 7101f7e4b00b
children 7edcae695986
files datatypes_conf.xml
diffstat 1 files changed, 18 insertions(+), 15 deletions(-) [+]
line wrap: on
line diff
--- a/datatypes_conf.xml	Wed May 08 03:25:50 2013 -0400
+++ b/datatypes_conf.xml	Mon Mar 10 19:38:57 2014 -0400
@@ -2,44 +2,48 @@
 <datatypes>
   <datatype_files>
     <datatype_file name="proteomics.py"/>
-  </datatype_files>		
+  </datatype_files>
   <registration display_path="display_applications">
-    <datatype extension="prot_gff" type="galaxy.datatypes.proteomics:ProtGff" mimetype="application/xml" display_in_upload="true">
-       <display file="proteomics/ProtGff.xml" />
-    </datatype>	
     <datatype extension="pepxml" type="galaxy.datatypes.proteomics:PepXml" mimetype="application/xml" display_in_upload="true">
       <display file="proteomics/PepXml.xml" />
     </datatype>
-    <datatype extension="raw_pepxml" type="galaxy.datatypes.proteomics:PepXml" subclass="true">
+    <datatype extension="raw_pepxml" type="galaxy.datatypes.proteomics:PepXml" mimetype="application/xml" subclass="true">
       <display file="proteomics/PepXml.xml" />
     </datatype>
-    <datatype extension="peptideprophet_pepxml" type="galaxy.datatypes.proteomics:PepXml" subclass="true">
+    <datatype extension="peptideprophet_pepxml" type="galaxy.datatypes.proteomics:PepXml" mimetype="application/xml" subclass="true">
       <display file="proteomics/PepXml.xml" />
     </datatype>
-    <datatype extension="interprophet_pepxml" type="galaxy.datatypes.proteomics:PepXml" subclass="true">
+    <datatype extension="interprophet_pepxml" type="galaxy.datatypes.proteomics:PepXml" mimetype="application/xml" subclass="true">
       <display file="proteomics/PepXml.xml" />
     </datatype>
-    <datatype extension="protxml" type="galaxy.datatypes.proteomics:ProtXML" display_in_upload="true" >
+    <datatype extension="protxml" type="galaxy.datatypes.proteomics:ProtXML" mimetype="application/xml" display_in_upload="true" >
       <display file="proteomics/ProtXml.xml"/>
     </datatype>
+    <datatype extension="pepxml.tsv" type="galaxy.datatypes.proteomics:PepXmlReport" display_in_upload="true" />
+    <datatype extension="protxml.tsv" type="galaxy.datatypes.proteomics:ProtXmlReport" display_in_upload="true" />
     <datatype extension="mascotdat" type="galaxy.datatypes.proteomics:MascotDat" display_in_upload="false" />
     <datatype extension="mzml" type="galaxy.datatypes.proteomics:MzML" mimetype="application/xml" display_in_upload="true">
       <display file="proteomics/mzML.xml"/>
+      <display file="proteomics/protvis_mzml.xml"/>
     </datatype>
-    <datatype extension="mgf" type="galaxy.datatypes.proteomics:Mgf" display_in_upload="true" />		
-    <datatype extension="xls" type="galaxy.datatypes.proteomics:Xls" display_in_upload="true" />
+    <datatype extension="mgf" type="galaxy.datatypes.proteomics:Mgf" display_in_upload="true" />
+    <datatype extension="idpdb" type="galaxy.datatypes.proteomics:IdpDB" display_in_upload="true" />
+    <datatype extension="wiff" type="galaxy.datatypes.proteomics:Wiff" display_in_upload="true" />
     <datatype extension="mzxml" type="galaxy.datatypes.proteomics:MzXML" mimetype="application/xml" display_in_upload="true" />
     <datatype extension="mzq" type="galaxy.datatypes.proteomics:MzQuantML" mimetype="application/xml" display_in_upload="true" />
     <datatype extension="mzid" type="galaxy.datatypes.proteomics:MzIdentML" mimetype="application/xml" display_in_upload="true" />
-    <datatype extension="traML" type="galaxy.datatypes.proteomics:TraML" mimetype="application/xml" display_in_upload="true" />
-    <datatype extension="raw" type="galaxy.datatypes.proteomics:RAW" display_in_upload="true" />
+    <datatype extension="traml" type="galaxy.datatypes.proteomics:TraML" mimetype="application/xml" display_in_upload="true" />
+    <datatype extension="featurexml" type="galaxy.datatypes.proteomics:FeatureXML" mimetype="application/xml" display_in_upload="true" />
+    <datatype extension="consensusxml" type="galaxy.datatypes.proteomics:ConsensusXML" mimetype="application/xml" display_in_upload="true" />
+    <datatype extension="idxml" type="galaxy.datatypes.proteomics:IdXML" mimetype="application/xml" display_in_upload="true" />
+    <datatype extension="raw" type="galaxy.datatypes.proteomics:RAW" mimetype="application/octet-stream" display_in_upload="true" />
     <datatype extension="msp" type="galaxy.datatypes.proteomics:Msp" display_in_upload="true" />
     <datatype extension="ms2" type="galaxy.datatypes.proteomics:Ms2" display_in_upload="true" />
-    <datatype extension="hlf" type="galaxy.datatypes.proteomics:XHunterAslFormat" display_in_upload="true" />
+    <datatype extension="hlf" type="galaxy.datatypes.proteomics:XHunterAslFormat" mimetype="application/octet-stream" display_in_upload="true" />
   </registration>
   <sniffers>
     <sniffer type="galaxy.datatypes.proteomics:ProtGff"/>
-    <sniffer type="galaxy.datatypes.proteomics:MzML"/>        
+    <sniffer type="galaxy.datatypes.proteomics:MzML"/>
     <sniffer type="galaxy.datatypes.proteomics:PepXml"/>
     <sniffer type="galaxy.datatypes.proteomics:Mgf"/>
     <sniffer type="galaxy.datatypes.proteomics:ProtXML"/>
@@ -47,6 +51,5 @@
     <sniffer type="galaxy.datatypes.proteomics:TraML"/>
     <sniffer type="galaxy.datatypes.proteomics:MzIdentML"/>
     <sniffer type="galaxy.datatypes.proteomics:MzQuantML"/>
-    <sniffer type="galaxy.datatypes.proteomics:Xls"/>
   </sniffers>
 </datatypes>