Mercurial > repos > iracooke > package_tpp_4_6_1
changeset 10:b856e62d76cf draft default tip
Uploaded
author | iracooke |
---|---|
date | Mon, 03 Mar 2014 00:00:53 -0500 |
parents | 9e12820b140d |
children | |
files | tool_dependencies.xml |
diffstat | 1 files changed, 8 insertions(+), 3 deletions(-) [+] |
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--- a/tool_dependencies.xml Sun Mar 02 22:46:47 2014 -0500 +++ b/tool_dependencies.xml Mon Mar 03 00:00:53 2014 -0500 @@ -4,7 +4,7 @@ <repository changeset_revision="2a074c7b442e" name="package_libgd_2_1" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> </package> <package name="libpng" version="1.2.5"> - <repository changeset_revision="d7f6d1ad51e2" name="package_libpng_1_2" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="821c27341c0e" name="package_libpng_1_2" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> </package> <package name="bzlib" version="1.0.6"> <repository changeset_revision="d5188682d08e" name="package_bzlib_1_0" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> @@ -18,12 +18,12 @@ <package name="trans_proteomic_pipeline" version="4.6.1"> <install version="1.0"> <actions> - <!-- populate the environment variables from the dependend repos --> + <!-- populate the environment variables from the dependent repos --> <action type="set_environment_for_install"> <repository changeset_revision="2a074c7b442e" name="package_libgd_2_1" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> <package name="libgd" version="2.1.0" /> </repository> - <repository changeset_revision="d7f6d1ad51e2" name="package_libpng_1_2" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> + <repository changeset_revision="821c27341c0e" name="package_libpng_1_2" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> <package name="libpng" version="1.2.5" /> </repository> <repository changeset_revision="d5188682d08e" name="package_bzlib_1_0" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> @@ -54,6 +54,11 @@ <action type="shell_command">eval $(perl -I$PERL_LOCALLIB_DIR/lib/perl5 -Mlocal::lib=$PERL_LOCALLIB_DIR); make; make install</action> + <action type="set_environment"> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + <environment_variable action="set_to" name="TPP_ROOT_PATH">$INSTALL_DIR</environment_variable> + </action> + </actions> </install> <readme>