Mercurial > repos > iracooke > package_tpp_4_6_1

changeset 10:b856e62d76cf draft default tip

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Uploaded
author iracooke
date Mon, 03 Mar 2014 00:00:53 -0500
parents 9e12820b140d
children
files tool_dependencies.xml
diffstat 1 files changed, 8 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Sun Mar 02 22:46:47 2014 -0500
+++ b/tool_dependencies.xml	Mon Mar 03 00:00:53 2014 -0500
@@ -4,7 +4,7 @@
         <repository changeset_revision="2a074c7b442e" name="package_libgd_2_1" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="libpng" version="1.2.5">
-        <repository changeset_revision="d7f6d1ad51e2" name="package_libpng_1_2" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="821c27341c0e" name="package_libpng_1_2" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="bzlib" version="1.0.6">
         <repository changeset_revision="d5188682d08e" name="package_bzlib_1_0" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
@@ -18,12 +18,12 @@
     <package name="trans_proteomic_pipeline" version="4.6.1">
         <install version="1.0">
             <actions>
-                <!-- populate the environment variables from the dependend repos -->
+                <!-- populate the environment variables from the dependent repos -->
                 <action type="set_environment_for_install">
                     <repository changeset_revision="2a074c7b442e" name="package_libgd_2_1" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
                         <package name="libgd" version="2.1.0" />
                     </repository>
-                    <repository changeset_revision="d7f6d1ad51e2" name="package_libpng_1_2" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
+                    <repository changeset_revision="821c27341c0e" name="package_libpng_1_2" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
                         <package name="libpng" version="1.2.5" />
                     </repository>
                     <repository changeset_revision="d5188682d08e" name="package_bzlib_1_0" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
@@ -54,6 +54,11 @@
 
                 <action type="shell_command">eval $(perl -I$PERL_LOCALLIB_DIR/lib/perl5 -Mlocal::lib=$PERL_LOCALLIB_DIR); make; make install</action>
 
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                    <environment_variable action="set_to" name="TPP_ROOT_PATH">$INSTALL_DIR</environment_variable>
+                </action>
+
             </actions>
         </install>
         <readme>