Mercurial > repos > iracooke > package_tpp_4_6_1
changeset 5:bfcfbba3403e
Uploaded
| author | iracooke |
|---|---|
| date | Wed, 06 Nov 2013 00:52:39 -0500 |
| parents | c4c50fbac9d9 |
| children | c0e73546cd42 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 19 insertions(+), 3 deletions(-) [+] |
line wrap: on
line diff
--- a/tool_dependencies.xml Tue Nov 05 19:20:50 2013 -0500 +++ b/tool_dependencies.xml Wed Nov 06 00:52:39 2013 -0500 @@ -1,7 +1,13 @@ <?xml version="1.0"?> <tool_dependency> <package name="libgd" version="2.1.0"> - <repository changeset_revision="b17bbb1a41da" name="package_libgd_2_1" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="016ad1de8f18" name="package_libgd_2_1" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="libpng" version="1.2.5"> + <repository changeset_revision="a80a3062f066" name="package_libpng_1_2" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="bzlib" version="1.0.6"> + <repository changeset_revision="04e1967b1722" name="package_bzlib_1_0" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> </package> <package name="perl" version="5.18.1"> <repository changeset_revision="ab58b9f990c5" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> @@ -14,9 +20,15 @@ <actions> <!-- populate the environment variables from the dependend repos --> <action type="set_environment_for_install"> - <repository changeset_revision="b17bbb1a41da" name="package_libgd_2_1" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> + <repository changeset_revision="016ad1de8f18" name="package_libgd_2_1" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> <package name="libgd" version="2.1.0" /> </repository> + <repository changeset_revision="a80a3062f066" name="package_libpng_1_2" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> + <package name="libpng" version="1.2.5" /> + </repository> + <repository changeset_revision="04e1967b1722" name="package_bzlib_1_0" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> + <package name="bzlib" version="1.0.6" /> + </repository> <repository changeset_revision="8fc96166cddd" name="package_expat_2_1" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> <package name="expat" version="2.1.0" /> </repository> @@ -34,7 +46,11 @@ <action type="shell_command">echo 'TPP_WEB=/tpp/' >> Makefile.config.incl</action> <action type="shell_command">echo 'CGI_USER_DIR=$INSTALL_DIR/cgi-bin/' >> Makefile.config.incl</action> - <action type="shell_command">echo "TPP_ROOT=$INSTALL_DIR/\nTPP_WEB=/tpp/\nXSLT_PROC=/usr/bin/xsltproc\nCGI_USERS_DIR=$INSTALL_DIR/cgi-bin/" > "TPP-$tpp_version/trans_proteomic_pipeline/src/Makefile.config.incl"</action> + <action type="shell_command">echo "TPP_ROOT=$INSTALL_DIR/\nTPP_WEB=/tpp/\nXSLT_PROC=/usr/bin/xsltproc\nCGI_USERS_DIR=$INSTALL_DIR/cgi-bin/" > "Makefile.config.incl"</action> + + + <action type="shell_command">sed -i -e 's/qw(.*) /(&) /' ../CGI/show_nspbin.pl</action> + <action type="shell_command">sed -i -e 's/qw(.*) /(&) /' ../perl/exporTPP.pl</action> <action type="shell_command">eval $(perl -I$PERL_LOCALLIB_DIR/lib/perl5 -Mlocal::lib=$PERL_LOCALLIB_DIR); make; make install</action>