Mercurial > repos > iracooke > package_tpp_4_6_1
changeset 1:b72af28d9da2
Updated README
| author | iracooke |
|---|---|
| date | Wed, 23 Oct 2013 23:48:11 -0400 |
| parents | |
| children | 826234dd2977 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 29 insertions(+), 0 deletions(-) [+] |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Wed Oct 23 23:48:11 2013 -0400 @@ -0,0 +1,29 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="trans_proteomic_pipeline" version="4.6.1"> + <install version="1.0"> + <actions> + <action type="download_by_url">https://dl.dropboxusercontent.com/u/226794/galaxy/tpp_4.6.1.tar.gz</action> + <action language="cheetah" type="template_command"> + sh install.sh $env.INSTALL_DIR + </action> + <action type="set_environment"> + <environment_variable action="set_to" name="TPP_PERL_DIR">$INSTALL_DIR/perl5</environment_variable> + <environment_variable action="set_to" name="PROTK_TPP_ROOT">$INSTALL_DIR</environment_variable> + </action> + </actions> + </install> + <readme> + This part of the installer is extremely minimal. It just downloads and runs a shell script that does the install. + The installer will attempt to do the following; + + 1. Download and install perl-locallib and cpanminus + 2. Install perl packages required by the TPP into a self contained perl local lib + 3. Download the source code of the TPP and compile it. + + Installation has been tested on an Ubuntu Precise 64 box with the following system packages installed + curl build-essential mercurial libperl-dev liblocal-lib-perl cpanminus libxml2-dev expat libexpat1-dev libbz2-dev + + </readme> + </package> +</tool_dependency>