Mercurial > repos > iracooke > package_proteowizard_3_0_4388

changeset 4:d93cde5180d8 draft

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Added chmod command
author iracooke
date Mon, 10 Mar 2014 20:12:04 -0400
parents a2cbef24e9fd
children 1b836077472e
files tool_dependencies.xml
diffstat 1 files changed, 8 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu Oct 24 20:18:09 2013 -0400
+++ b/tool_dependencies.xml	Mon Mar 10 20:12:04 2014 -0400
@@ -73,11 +73,16 @@
         <url_template os="linux">https://dl.dropboxusercontent.com/u/226794/galaxy/pwiz-bin-linux-x86_64-gcc42-release-3_0_4388/unimod_2.xsd</url_template>
         <url_template os="linux">https://dl.dropboxusercontent.com/u/226794/galaxy/pwiz-bin-darwin-x86-xgcc40-release-3_0_4388/unimod_2.xsd</url_template>
       </action>
-          	<action type="set_environment">
+      
+      <action type="shell_command">
+        cd $INSTALL_DIR;chmod u+x chainsaw idcat idconvert msaccess msbenchmark mscat msconvert msdiff msdir msistats mspicture peakaboo pepcat pepsum sldout txt2mzml
+      </action>
+
+          <action type="set_environment">
 	        	<environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
               	<environment_variable action="set_to" name="PROTK_PWIZ_ROOT">$INSTALL_DIR</environment_variable>
-           	</action>
-            </actions>            
+           </action>
+      </actions>            
         </install>
      	<readme>
            	By installing this package you are agreeing to the terms of the license below