Mercurial > repos > iracooke > omssa
changeset 4:927cc9160762
Cleanup xml
| author | iracooke@gmail.com |
|---|---|
| date | Thu, 26 Sep 2013 14:48:27 +1000 |
| parents | ae9195035aa6 |
| children | 3aafd0a91830 |
| files | omssa.xml repository_dependencies.xml tool_dependencies.xml |
| diffstat | 3 files changed, 7 insertions(+), 19 deletions(-) [+] |
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--- a/omssa.xml Thu Sep 26 14:33:15 2013 +1000 +++ b/omssa.xml Thu Sep 26 14:48:27 2013 +1000 @@ -2,9 +2,7 @@ <requirements> <requirement type="package" version="2.1.9">protk_omssa</requirement> -<!-- <requirement type="package" version="2.1.9">omssa</requirement> - <requirement type="package" version="2.2.27">blast</requirement> - --> </requirements> + </requirements> <description>Run an OMSSA MS/MS Search</description>
--- a/repository_dependencies.xml Thu Sep 26 14:33:15 2013 +1000 +++ b/repository_dependencies.xml Thu Sep 26 14:48:27 2013 +1000 @@ -1,12 +1,4 @@ <?xml version="1.0"?> -<repositories description="Proteomics datatypes, omssa and blast executables"> - +<repositories description="Proteomics datatypes"> <repository toolshed="http://testtoolshed.g2.bx.psu.edu" name="proteomics_datatypes" owner="iracooke" changeset_revision="7101f7e4b00b"/> - -<!-- <repository toolshed="http://toolshed.g2.bx.psu.edu" name="galaxy_protk" owner="iracooke" changeset_revision="dac478a72c1d" prior_installation_required="True"/> - - <repository toolshed="http://toolshed.g2.bx.psu.edu" name="protk_blast" owner="iracooke" changeset_revision="0d86d29aaed6" /> - - <repository toolshed="http://toolshed.g2.bx.psu.edu" name="protk_omssa" owner="iracooke" changeset_revision="f77532db59b6" /> - --> </repositories>
--- a/tool_dependencies.xml Thu Sep 26 14:33:15 2013 +1000 +++ b/tool_dependencies.xml Thu Sep 26 14:48:27 2013 +1000 @@ -4,15 +4,13 @@ <install version="1.0"> <actions> <action type="setup_rvm" ruby="1.9.3-p448"> - <gem version="1.2.4">protk</gem> + <gem version="1.2.4">protk</gem> </action> <action type="shell_command">protk_setup.rb blast</action> <action type="shell_command">protk_setup.rb omssa</action> </actions> - </install> - <readme> - RVM Example - </readme> - </package> - + </install> + + <readme>Installer for omssa using the protk ruby gem</readme> + </package> </tool_dependency>