# HG changeset patch
# User iracooke@gmail.com
# Date 1380170907 -36000
# Node ID 927cc91607624b695fc8b43603fd8a557416b94a
# Parent  ae9195035aa6fd47fc92598c0cd9c66cf8b86838
Cleanup xml

diff -r ae9195035aa6 -r 927cc9160762 omssa.xml
--- a/omssa.xml	Thu Sep 26 14:33:15 2013 +1000
+++ b/omssa.xml	Thu Sep 26 14:48:27 2013 +1000
@@ -2,9 +2,7 @@
 
    <requirements>
 	    <requirement type="package" version="2.1.9">protk_omssa</requirement>
-<!--     	<requirement type="package" version="2.1.9">omssa</requirement>
-    	<requirement type="package" version="2.2.27">blast</requirement>
- -->   </requirements>
+	</requirements>
 
 
 	<description>Run an OMSSA MS/MS Search</description>
diff -r ae9195035aa6 -r 927cc9160762 repository_dependencies.xml
--- a/repository_dependencies.xml	Thu Sep 26 14:33:15 2013 +1000
+++ b/repository_dependencies.xml	Thu Sep 26 14:48:27 2013 +1000
@@ -1,12 +1,4 @@
 <?xml version="1.0"?>
-<repositories description="Proteomics datatypes, omssa and blast executables">
-
+<repositories description="Proteomics datatypes">
 	<repository toolshed="http://testtoolshed.g2.bx.psu.edu" name="proteomics_datatypes" owner="iracooke" changeset_revision="7101f7e4b00b"/>
-
-<!--     <repository toolshed="http://toolshed.g2.bx.psu.edu" name="galaxy_protk" owner="iracooke" changeset_revision="dac478a72c1d" prior_installation_required="True"/>
-
-    <repository toolshed="http://toolshed.g2.bx.psu.edu" name="protk_blast" owner="iracooke" changeset_revision="0d86d29aaed6" />
-
-    <repository toolshed="http://toolshed.g2.bx.psu.edu" name="protk_omssa" owner="iracooke" changeset_revision="f77532db59b6" />
- -->
 </repositories>
diff -r ae9195035aa6 -r 927cc9160762 tool_dependencies.xml
--- a/tool_dependencies.xml	Thu Sep 26 14:33:15 2013 +1000
+++ b/tool_dependencies.xml	Thu Sep 26 14:48:27 2013 +1000
@@ -4,15 +4,13 @@
 		<install version="1.0">
     	<actions>
      		<action type="setup_rvm" ruby="1.9.3-p448">
-     		<gem version="1.2.4">protk</gem>
+     			<gem version="1.2.4">protk</gem>
      		</action>
  			<action type="shell_command">protk_setup.rb blast</action>
  			<action type="shell_command">protk_setup.rb omssa</action>
 		</actions>
-    		</install>
-   		<readme>
-               RVM Example
-             </readme>
-        </package>
-
+    	</install>
+ 	
+ 	<readme>Installer for omssa using the protk ruby gem</readme>
+ 	</package>
 </tool_dependency>