Mercurial > repos > iracooke > omssa

changeset 19:03f28a572366

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Update dependencies
author Ira Cooke <iracooke@gmail.com>
date Wed, 30 Oct 2013 17:54:15 +1100
parents 3bf8b693ea18
children 46d88b1713ee
files repository_dependencies.xml tool_dependencies.xml
diffstat 2 files changed, 2 insertions(+), 12 deletions(-) [+]
line wrap: on
line diff
--- a/repository_dependencies.xml	Wed Oct 30 17:12:28 2013 +1100
+++ b/repository_dependencies.xml	Wed Oct 30 17:54:15 2013 +1100
@@ -2,7 +2,7 @@
 <repositories description="Proteomics datatypes, omssa and blast executables">
 
 	<repository toolshed="http://testtoolshed.g2.bx.psu.edu" name="proteomics_datatypes" owner="iracooke" changeset_revision="7101f7e4b00b"/>
-	<repository toolshed="http://testtoolshed.g2.bx.psu.edu" name="package_protk_1_2_5" owner="iracooke" changeset_revision="87ced743f9cb"/>
+	<repository toolshed="http://testtoolshed.g2.bx.psu.edu" name="package_protk_1_2_5" owner="iracooke" changeset_revision="1100ac98dfd2"/>
 	<repository toolshed="http://testtoolshed.g2.bx.psu.edu" name="package_omssa_2_1_9" owner="iracooke" changeset_revision="a71ce3af685a"/>
 	<repository toolshed="http://testtoolshed.g2.bx.psu.edu" name="package_blast_plus_2_2_27" owner="iuc" changeset_revision="eab09bc4d63e"/>
 
--- a/tool_dependencies.xml	Wed Oct 30 17:12:28 2013 +1100
+++ b/tool_dependencies.xml	Wed Oct 30 17:54:15 2013 +1100
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <tool_dependency>
 	<package name="protk" version="1.2.5">
-        <repository toolshed="http://testtoolshed.g2.bx.psu.edu" name="package_protk_1_2_5" owner="iracooke" changeset_revision="87ced743f9cb"/>
+        <repository toolshed="http://testtoolshed.g2.bx.psu.edu" name="package_protk_1_2_5" owner="iracooke" changeset_revision="1100ac98dfd2"/>
     </package>
 
     <package name="blast+" version="2.2.27">
@@ -10,16 +10,6 @@
 
     <package name="omssa" version="2.1.9">
         <repository toolshed="http://testtoolshed.g2.bx.psu.edu" name="package_omssa_2_1_9" owner="iracooke" changeset_revision="a71ce3af685a"/>
-        <install version="1.0">
-            <actions>                   
-                <action type="set_environment">
-                    <environment_variable name="PROTK_BLAST_ROOT" action="set_to">FROMPATH</environment_variable>
-                </action>
-            </actions>
-        </install>
-        <readme>
-            Sets environment variables for OMSSA
-        </readme>
     </package>
 
 </tool_dependency>