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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit b2acc1845a25828181597fe5b6982fe116a7796d
author imgteam
date Mon, 22 Jul 2019 04:57:12 -0400
parents 87e7a5835f77
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398ca4f5e279 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit b2acc1845a25828181597fe5b6982fe116a7796d
imgteam
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1 <tool id="ip_labelimage_to_points" name="Label to Points" version="0.2">
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87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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2 <description>Converts label image to points</description>
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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3 <requirements>
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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4 <requirement type="package" version="0.14.2">scikit-image</requirement>
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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5 <requirement type="package" version="0.21.0">pandas</requirement>
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398ca4f5e279 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit b2acc1845a25828181597fe5b6982fe116a7796d
imgteam
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6 <requirement type="package" version="0.15.1">tifffile</requirement>
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87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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7 </requirements>
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398ca4f5e279 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit b2acc1845a25828181597fe5b6982fe116a7796d
imgteam
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8 <command detect_errors="aggressive">
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87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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9 <![CDATA[
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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10 python '$__tool_directory__/labelimage2points.py' '$input' '$output'
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398ca4f5e279 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit b2acc1845a25828181597fe5b6982fe116a7796d
imgteam
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11 ]]>
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87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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12 </command>
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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13 <inputs>
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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14 <param name="input" type="data" format="tiff,png,jpg,bmp" label="Label image file"/>
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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15 </inputs>
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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16 <outputs>
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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17 <data format="tabular" name="output"/>
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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18 </outputs>
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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19 <tests>
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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20 <test>
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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21 <param name="input" value="label.tif" />
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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22 <output name="output" value="points.tsv" ftype="tabular" />
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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23 </test>
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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24 </tests>
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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25 <help>
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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26 **What it does**
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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27
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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28 Calculates the center of mass for all differently colored regions in the image.
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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29 </help>
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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30 <citations>
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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31 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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32 </citations>
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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33 </tool>