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annotate labelimage2points.xml @ 0:87e7a5835f77 draft

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
author imgteam
date Sat, 09 Feb 2019 14:18:19 -0500
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children 398ca4f5e279
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87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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1 <tool id="ip_labelimage_to_points" name="Label to Points" version="0.1">
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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2 <description>Converts label image to points</description>
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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3 <requirements>
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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4 <requirement type="package" version="0.14.2">scikit-image</requirement>
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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5 <requirement type="package" version="0.21.0">pandas</requirement>
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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6 </requirements>
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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7 <command>
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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8 <![CDATA[
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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9 python '$__tool_directory__/labelimage2points.py' '$input' '$output'
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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10 ]]>
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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11 </command>
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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12 <inputs>
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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13 <param name="input" type="data" format="tiff,png,jpg,bmp" label="Label image file"/>
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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14 </inputs>
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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15 <outputs>
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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16 <data format="tabular" name="output"/>
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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17 </outputs>
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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18 <tests>
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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19 <test>
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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20 <param name="input" value="label.tif" />
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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21 <output name="output" value="points.tsv" ftype="tabular" />
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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22 </test>
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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23 </tests>
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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24 <help>
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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25 **What it does**
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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26
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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27 Calculates the center of mass for all differently colored regions in the image.
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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28 </help>
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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29 <citations>
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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30 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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31 </citations>
87e7a5835f77 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/labelimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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32 </tool>