Mercurial > repos > imgteam > imagecoordinates_flipaxis

annotate imagecoordinates_flipaxis.xml @ 0:c7a4d8a8b55e draft

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/imagecoordinates_flipaxis/ commit 67eaf2b9a9ee1bfed14afba33007ef595890400c
author imgteam
date Wed, 20 Mar 2019 12:05:45 -0400
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children fb6b557a2937
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c7a4d8a8b55e planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/imagecoordinates_flipaxis/ commit 67eaf2b9a9ee1bfed14afba33007ef595890400c
imgteam
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1 <tool id="imagecoordinates_flipaxis" name="Switch axis coordinates" version="0.1">
c7a4d8a8b55e planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/imagecoordinates_flipaxis/ commit 67eaf2b9a9ee1bfed14afba33007ef595890400c
imgteam
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2 <description>Switches the axes of an image and flips the y axis.</description>
c7a4d8a8b55e planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/imagecoordinates_flipaxis/ commit 67eaf2b9a9ee1bfed14afba33007ef595890400c
imgteam
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3 <requirements>
c7a4d8a8b55e planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/imagecoordinates_flipaxis/ commit 67eaf2b9a9ee1bfed14afba33007ef595890400c
imgteam
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4 <requirement type="package" version="0.23.4" >pandas</requirement>
c7a4d8a8b55e planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/imagecoordinates_flipaxis/ commit 67eaf2b9a9ee1bfed14afba33007ef595890400c
imgteam
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5 </requirements>
c7a4d8a8b55e planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/imagecoordinates_flipaxis/ commit 67eaf2b9a9ee1bfed14afba33007ef595890400c
imgteam
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6 <command detect_errors="aggressive">
c7a4d8a8b55e planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/imagecoordinates_flipaxis/ commit 67eaf2b9a9ee1bfed14afba33007ef595890400c
imgteam
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7 <![CDATA[
c7a4d8a8b55e planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/imagecoordinates_flipaxis/ commit 67eaf2b9a9ee1bfed14afba33007ef595890400c
imgteam
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8 python "$__tool_directory__/imagecoordinates_flipaxis.py" '$input' '$output' $img_height
c7a4d8a8b55e planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/imagecoordinates_flipaxis/ commit 67eaf2b9a9ee1bfed14afba33007ef595890400c
imgteam
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9 ]]>
c7a4d8a8b55e planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/imagecoordinates_flipaxis/ commit 67eaf2b9a9ee1bfed14afba33007ef595890400c
imgteam
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10 </command>
c7a4d8a8b55e planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/imagecoordinates_flipaxis/ commit 67eaf2b9a9ee1bfed14afba33007ef595890400c
imgteam
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11 <inputs>
c7a4d8a8b55e planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/imagecoordinates_flipaxis/ commit 67eaf2b9a9ee1bfed14afba33007ef595890400c
imgteam
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12 <param name="input" type="data" format="tabular" label="File with image coordinates"/>
c7a4d8a8b55e planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/imagecoordinates_flipaxis/ commit 67eaf2b9a9ee1bfed14afba33007ef595890400c
imgteam
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13 <param name="img_height" type="integer" value="100" label="Height of the corresponding image"/>
c7a4d8a8b55e planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/imagecoordinates_flipaxis/ commit 67eaf2b9a9ee1bfed14afba33007ef595890400c
imgteam
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14 </inputs>
c7a4d8a8b55e planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/imagecoordinates_flipaxis/ commit 67eaf2b9a9ee1bfed14afba33007ef595890400c
imgteam
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15 <outputs>
c7a4d8a8b55e planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/imagecoordinates_flipaxis/ commit 67eaf2b9a9ee1bfed14afba33007ef595890400c
imgteam
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16 <data name="output" format="tabular"/>
c7a4d8a8b55e planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/imagecoordinates_flipaxis/ commit 67eaf2b9a9ee1bfed14afba33007ef595890400c
imgteam
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17 </outputs>
c7a4d8a8b55e planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/imagecoordinates_flipaxis/ commit 67eaf2b9a9ee1bfed14afba33007ef595890400c
imgteam
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18 <tests>
c7a4d8a8b55e planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/imagecoordinates_flipaxis/ commit 67eaf2b9a9ee1bfed14afba33007ef595890400c
imgteam
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19 <test>
c7a4d8a8b55e planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/imagecoordinates_flipaxis/ commit 67eaf2b9a9ee1bfed14afba33007ef595890400c
imgteam
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20 <param name="input" value="table.tsv" />
c7a4d8a8b55e planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/imagecoordinates_flipaxis/ commit 67eaf2b9a9ee1bfed14afba33007ef595890400c
imgteam
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21 <param name="img_height" value="500"/>
c7a4d8a8b55e planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/imagecoordinates_flipaxis/ commit 67eaf2b9a9ee1bfed14afba33007ef595890400c
imgteam
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22 <output name="output" value="out2.tsv" ftype="tabular" />
c7a4d8a8b55e planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/imagecoordinates_flipaxis/ commit 67eaf2b9a9ee1bfed14afba33007ef595890400c
imgteam
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23 </test>
c7a4d8a8b55e planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/imagecoordinates_flipaxis/ commit 67eaf2b9a9ee1bfed14afba33007ef595890400c
imgteam
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24 </tests>
c7a4d8a8b55e planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/imagecoordinates_flipaxis/ commit 67eaf2b9a9ee1bfed14afba33007ef595890400c
imgteam
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25 <help>Makes x the horizontal axis (left to right) and y the vertical axis (bottom to top),
c7a4d8a8b55e planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/imagecoordinates_flipaxis/ commit 67eaf2b9a9ee1bfed14afba33007ef595890400c
imgteam
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26 like in a coordinate system.</help>
c7a4d8a8b55e planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/imagecoordinates_flipaxis/ commit 67eaf2b9a9ee1bfed14afba33007ef595890400c
imgteam
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27 <citations>
c7a4d8a8b55e planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/imagecoordinates_flipaxis/ commit 67eaf2b9a9ee1bfed14afba33007ef595890400c
imgteam
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28 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
c7a4d8a8b55e planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/imagecoordinates_flipaxis/ commit 67eaf2b9a9ee1bfed14afba33007ef595890400c
imgteam
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29 </citations>
c7a4d8a8b55e planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/imagecoordinates_flipaxis/ commit 67eaf2b9a9ee1bfed14afba33007ef595890400c
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30 </tool>