Mercurial > repos > imgteam > binary2labelimage

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"planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binary2labelimage/ commit 3d389fdec0db29cf6fbd783c0501455bf624fa90"
author imgteam
date Wed, 18 Dec 2019 09:56:41 +0000
parents 37b99b904027
children
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<tool id="ip_binary_to_labelimage" name="Binary 2 Label" version="0.4"> 
    <description>Converts Binary to Label Image</description>
    <requirements>
        <requirement type="package" version="0.12.3">scikit-image</requirement> 
        <requirement type="package" version="0.15.1">tifffile</requirement>
    </requirements>
    <command detect_errors="aggressive">
        <![CDATA[
        python '$__tool_directory__/binary2label.py' '$input' '$output'
        ]]>
    </command>
    <inputs>
        <param name="input" type="data" format="tiff,png,jpg,bmp" label="Binary Image File"/>
    </inputs>
    <outputs>
        <data format="tiff" name="output"/>
    </outputs>
    <tests>
        <test>
            <param name="input" value="galaxyIcon_noText.tif" />
            <output name="output" value="label.tif" ftype="tiff" compare="sim_size"/>
        </test>
    </tests>
    <help>
    **What it does**

    This tool assigns every object an own grey value.
    </help>
    <citations>
        <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
    </citations>
</tool>