Mercurial > repos > ieguinoa > data_manager_star_index_custom
changeset 1:67c59c6576db draft
Uploaded
| author | ieguinoa |
|---|---|
| date | Thu, 26 Aug 2021 20:04:16 +0000 |
| parents | e23440b3332a |
| children | 0cd30e1fd3eb |
| files | data_manager/rna_star_index_builder.xml |
| diffstat | 1 files changed, 4 insertions(+), 4 deletions(-) [+] |
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--- a/data_manager/rna_star_index_builder.xml Tue May 25 15:14:56 2021 +0000 +++ b/data_manager/rna_star_index_builder.xml Thu Aug 26 20:04:16 2021 +0000 @@ -11,7 +11,7 @@ <command><![CDATA[ if [ -z "\$GALAXY_MEMORY_MB" ] ; then - GALAXY_MEMORY_BYTES=31000000000 ; + GALAXY_MEMORY_BYTES=310000000000 ; else GALAXY_MEMORY_BYTES=\$((GALAXY_MEMORY_MB * 1000000)) ; fi ; @@ -28,8 +28,8 @@ --genomeDir '${target_directory}' --limitGenomeGenerateRAM \${GALAXY_MEMORY_BYTES} #if $GTFconditional.GTFselect == "withGTF": - #if $GTFconditional.GTF_source_conditional == "builtin_gff": - --sjdbGTFfile '${GTFconditional.GTF_source_conditional.all_gff_source.path}' + #if $GTFconditional.GTF_source_conditional.GTF_source_select == "builtin_gff": + --sjdbGTFfile '${GTFconditional.GTF_source_conditional.all_gff_source.fields.path}' #else --sjdbGTFfile '${GTFconditional.GTF_source_conditional.sjdbGTFfile}' #end if @@ -76,7 +76,7 @@ <option value="external_gff">Use an external GTF/GFF</option> </param> <when value="builtin_gff"> - <param name="all_gff_source" type="select" label="Source FASTA Sequence"> + <param name="all_gff_source" type="select" label="Select source GFF/GTF File"> <options from_data_table="all_gff"/> </param> </when>